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Conserved domains on  [gi|38640678|gb|AAR25974|]
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putative xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, partial [Bifidobacterium pullorum subsp. gallinarum]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
XFP super family cl34702
Phosphoketolase [Carbohydrate transport and metabolism];
1-167 1.47e-98

Phosphoketolase [Carbohydrate transport and metabolism];


The actual alignment was detected with superfamily member COG3957:

Pssm-ID: 443157 [Multi-domain]  Cd Length: 785  Bit Score: 300.50  E-value: 1.47e-98
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38640678   1 GRIREDLVLPPLDNYEVkEVAKfgHGWGQLEATRRLGVYTRDIIKLNPDSFRIFGPDETASNRLQAAYEVTNKQWDAGYL 80
Cdd:COG3957 364 GLLLRDLRLPDFRDYAV-DVPK--PGTVRAEATRVLGKYLRDVMKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEIL 440
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38640678  81 SEltDEHMAVTGQVTEQLSEHQMEGFIEGYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATvREIPWRKPISSMNLLV 160
Cdd:COG3957 441 PE--DEHLAPDGRVMEVLSEHQCQGWLEGYLLTGRHGLFSSYEAFIHIVDSMFNQHAKWLKVS-RELPWRRPIASLNYLL 517

                ....*..
gi 38640678 161 SSHVWRQ 167
Cdd:COG3957 518 TSHVWRQ 524
 
Name Accession Description Interval E-value
XFP COG3957
Phosphoketolase [Carbohydrate transport and metabolism];
1-167 1.47e-98

Phosphoketolase [Carbohydrate transport and metabolism];


Pssm-ID: 443157 [Multi-domain]  Cd Length: 785  Bit Score: 300.50  E-value: 1.47e-98
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38640678   1 GRIREDLVLPPLDNYEVkEVAKfgHGWGQLEATRRLGVYTRDIIKLNPDSFRIFGPDETASNRLQAAYEVTNKQWDAGYL 80
Cdd:COG3957 364 GLLLRDLRLPDFRDYAV-DVPK--PGTVRAEATRVLGKYLRDVMKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEIL 440
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38640678  81 SEltDEHMAVTGQVTEQLSEHQMEGFIEGYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATvREIPWRKPISSMNLLV 160
Cdd:COG3957 441 PE--DEHLAPDGRVMEVLSEHQCQGWLEGYLLTGRHGLFSSYEAFIHIVDSMFNQHAKWLKVS-RELPWRRPIASLNYLL 517

                ....*..
gi 38640678 161 SSHVWRQ 167
Cdd:COG3957 518 TSHVWRQ 524
PRK05261 PRK05261
phosphoketolase;
1-167 1.53e-96

phosphoketolase;


Pssm-ID: 235379 [Multi-domain]  Cd Length: 785  Bit Score: 295.17  E-value: 1.53e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38640678    1 GRIREDLVLPPLDNYEVKEVakfGHGWGQLEATRRLGVYTRDIIKLNPDSFRIFGPDETASNRLQAAYEVTNKQWDAGYL 80
Cdd:PRK05261 364 GLLLRDLRLPDFRDYAVPVG---KPGAVMAEATRVLGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEIL 440
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38640678   81 SEltDEHMAVTGQVTEQLSEHQMEGFIEGYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATvREIPWRKPISSMNLLV 160
Cdd:PRK05261 441 PY--DEHLAPDGRVMEVLSEHLCEGWLEGYLLTGRHGFFSSYEAFIHIVDSMFNQHAKWLKVA-REIPWRKPIPSLNYLL 517

                 ....*..
gi 38640678  161 SSHVWRQ 167
Cdd:PRK05261 518 TSHVWRQ 524
XFP pfam03894
D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; Bacterial enzyme splits ...
36-167 6.24e-83

D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; Bacterial enzyme splits fructose-6-P and/or xylulose-5-P with the aid of inorganic phosphate into either acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This family is distantly related to transketolases e.g. pfam02779.


Pssm-ID: 427575 [Multi-domain]  Cd Length: 176  Bit Score: 242.03  E-value: 6.24e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38640678    36 LGVYTRDIIKLNPDSFRIFGPDETASNRLQAAYEVTNKQWDAGYLSElTDEHMAVTGQVTEQLSEHQMEGFIEGYLLTGR 115
Cdd:pfam03894   2 LGKFLRDVIKLNPDNFRIFGPDETASNRLDAVFEVTKRQWQAPILPE-DDEHLAPDGRVIEVLSEHTCQGWLEGYLLTGR 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 38640678   116 HGIWSSYESFVHVIDSMLNQHAKWLEATvREIPWRKPISSMNLLVSSHVWRQ 167
Cdd:pfam03894  81 HGLFASYEAFAHIVDSMLNQHAKWLKMA-RELPWRAPVASLNYLLTSTVWRQ 131
 
Name Accession Description Interval E-value
XFP COG3957
Phosphoketolase [Carbohydrate transport and metabolism];
1-167 1.47e-98

Phosphoketolase [Carbohydrate transport and metabolism];


Pssm-ID: 443157 [Multi-domain]  Cd Length: 785  Bit Score: 300.50  E-value: 1.47e-98
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38640678   1 GRIREDLVLPPLDNYEVkEVAKfgHGWGQLEATRRLGVYTRDIIKLNPDSFRIFGPDETASNRLQAAYEVTNKQWDAGYL 80
Cdd:COG3957 364 GLLLRDLRLPDFRDYAV-DVPK--PGTVRAEATRVLGKYLRDVMKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEIL 440
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38640678  81 SEltDEHMAVTGQVTEQLSEHQMEGFIEGYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATvREIPWRKPISSMNLLV 160
Cdd:COG3957 441 PE--DEHLAPDGRVMEVLSEHQCQGWLEGYLLTGRHGLFSSYEAFIHIVDSMFNQHAKWLKVS-RELPWRRPIASLNYLL 517

                ....*..
gi 38640678 161 SSHVWRQ 167
Cdd:COG3957 518 TSHVWRQ 524
PRK05261 PRK05261
phosphoketolase;
1-167 1.53e-96

phosphoketolase;


Pssm-ID: 235379 [Multi-domain]  Cd Length: 785  Bit Score: 295.17  E-value: 1.53e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38640678    1 GRIREDLVLPPLDNYEVKEVakfGHGWGQLEATRRLGVYTRDIIKLNPDSFRIFGPDETASNRLQAAYEVTNKQWDAGYL 80
Cdd:PRK05261 364 GLLLRDLRLPDFRDYAVPVG---KPGAVMAEATRVLGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEIL 440
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38640678   81 SEltDEHMAVTGQVTEQLSEHQMEGFIEGYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATvREIPWRKPISSMNLLV 160
Cdd:PRK05261 441 PY--DEHLAPDGRVMEVLSEHLCEGWLEGYLLTGRHGFFSSYEAFIHIVDSMFNQHAKWLKVA-REIPWRKPIPSLNYLL 517

                 ....*..
gi 38640678  161 SSHVWRQ 167
Cdd:PRK05261 518 TSHVWRQ 524
XFP pfam03894
D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; Bacterial enzyme splits ...
36-167 6.24e-83

D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; Bacterial enzyme splits fructose-6-P and/or xylulose-5-P with the aid of inorganic phosphate into either acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This family is distantly related to transketolases e.g. pfam02779.


Pssm-ID: 427575 [Multi-domain]  Cd Length: 176  Bit Score: 242.03  E-value: 6.24e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38640678    36 LGVYTRDIIKLNPDSFRIFGPDETASNRLQAAYEVTNKQWDAGYLSElTDEHMAVTGQVTEQLSEHQMEGFIEGYLLTGR 115
Cdd:pfam03894   2 LGKFLRDVIKLNPDNFRIFGPDETASNRLDAVFEVTKRQWQAPILPE-DDEHLAPDGRVIEVLSEHTCQGWLEGYLLTGR 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 38640678   116 HGIWSSYESFVHVIDSMLNQHAKWLEATvREIPWRKPISSMNLLVSSHVWRQ 167
Cdd:pfam03894  81 HGLFASYEAFAHIVDSMLNQHAKWLKMA-RELPWRAPVASLNYLLTSTVWRQ 131
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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