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Conserved domains on  [gi|37957440|gb|AAP72117|]
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NADH dehydrogenase subunit II (mitochondrion) [Craugastor persimilis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 super family cl31790
NADH dehydrogenase subunit 2; Provisional
 1-344 1.15e-118

NADH dehydrogenase subunit 2; Provisional


The actual alignment was detected with superfamily member MTH00070:

Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 346.52  E-value: 1.15e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440    1 MNLYTIMLMILSLLLGSTITISSDHWILAWLGLEINTLAIIPLMASTYHPRAVEATTKYFLVQASASALLIFSCTMNAWV 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   81 TGEWTISPHTETIPINLLATALMMKIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEISPSTNLSLLLTMGLL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  161 SSIVGGWGGLNQTQIRKLLAYSSITHLGWMIAVSKLSPNLTLFSFVIYTLITSTLFLAMIILNVKTIQDFSIAWSKSPPI 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  241 MLFTLLLLLSLGGLPPLTGFIPKLLIAQKLVNEDLTIYATVLFFSSLLSLFIYLRLSYILTITMAPHPFFSTAYWLnpHK 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWR--FK 318

                        330       340
                 ....*....|....*....|....
gi 37957440  321 PHISMIFSIMMTLSLFLTPIYPLV 344
Cdd:MTH00070 319 NKTNNLLSLTIILSLMLLPITPTI 342
 
Name Accession Description Interval E-value
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-344 1.15e-118

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 346.52  E-value: 1.15e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440    1 MNLYTIMLMILSLLLGSTITISSDHWILAWLGLEINTLAIIPLMASTYHPRAVEATTKYFLVQASASALLIFSCTMNAWV 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   81 TGEWTISPHTETIPINLLATALMMKIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEISPSTNLSLLLTMGLL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  161 SSIVGGWGGLNQTQIRKLLAYSSITHLGWMIAVSKLSPNLTLFSFVIYTLITSTLFLAMIILNVKTIQDFSIAWSKSPPI 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  241 MLFTLLLLLSLGGLPPLTGFIPKLLIAQKLVNEDLTIYATVLFFSSLLSLFIYLRLSYILTITMAPHPFFSTAYWLnpHK 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWR--FK 318

                        330       340
                 ....*....|....*....|....
gi 37957440  321 PHISMIFSIMMTLSLFLTPIYPLV 344
Cdd:MTH00070 319 NKTNNLLSLTIILSLMLLPITPTI 342
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-217 5.53e-20

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 88.52  E-value: 5.53e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440    23 SDHWILAWLGLEINTLAIIPLMASTY-HPRAVEATTKYFLVQASASALLIFSCTMNAWVTG-----------EWTISPHT 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGkSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGtlsfdelskalTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440    91 ETIPINLLATALMMKIGIAPFHFWLPDVMQGISLHAGLIL-STWQKLPPI-----VLLLEISPSTNLSLLLTMGLLSSIV 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 37957440   165 GGWGGLNQTQIRKLLAYSSITHLGWMIAVSKLSPN----LTLFSFVIYTLITSTLFL 217
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiqAAIFHLLTHGLFSAGLFL 217
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 21-222 3.73e-17

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 82.09  E-value: 3.73e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  21 ISSDHWILAWLGLEINTLAIIPLMASTY-HPRAVEATTKYFLVQASASALLIFSCTMNAWVTGE-------WTISPHTET 92
Cdd:COG1007 119 ASANDLLTLFLGLELLSLSLYVLVAFRRdDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSlnlagiaAALAAGGAN 198

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  93 IPINLLATALMM-----KIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEISPSTNLSLLLTMGLLSSI---- 163
Cdd:COG1007 199 SPLLLLGLVLVLaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLAADWQLLLAVlavl 278

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 37957440 164 ---VGGWGGLNQTQIRKLLAYSSITHLGWM----IAVSKLSPNLTLFSFVIYTLITSTLFLAMIIL 222
Cdd:COG1007 279 smtVGNLAALAQTNVKRMLAYSSIAHAGYLllglAAGTPLGVSAALFYLLAYLFMNLGAFAVILLL 344
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 21-300 2.05e-15

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 76.91  E-value: 2.05e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440    21 ISSDHWILAWLGLEINTLAIIPLMASTYHPR-AVEATTKYFLVQASASALLIFSCTMNAWVTGEWTISP-----HTETIP 94
Cdd:TIGR01770 119 VSSNDLLSIYLGLELQSLCFYVLAGLKRKSRfSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDlllflSNGMLN 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440    95 INLLA-------TALMMKIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEISPS-------TNLSLLLTMGLL 160
Cdd:TIGR01770 199 ISLLLlgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYilfgfseAWQIFLAIIAFL 278

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   161 SSIVGGWGGLNQTQIRKLLAYSSITHLGW-MIAVSKLSPNL---TLFSFVIYTLITSTLFLAMIILN------VKTIQDF 230
Cdd:TIGR01770 279 SMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGikaVLFYIFIYALMSLGAFGVLSLLRsykdewIEYISDF 358

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   231 SIAWSKSPPIMLFTLLLLLSLGGLPPLTGFIPKLLIAQKLVNEDLTIYATVLFFSSLLSLFIYLRLSYIL 300
Cdd:TIGR01770 359 AGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVM 428
 
Name Accession Description Interval E-value
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-344 1.15e-118

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 346.52  E-value: 1.15e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440    1 MNLYTIMLMILSLLLGSTITISSDHWILAWLGLEINTLAIIPLMASTYHPRAVEATTKYFLVQASASALLIFSCTMNAWV 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   81 TGEWTISPHTETIPINLLATALMMKIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEISPSTNLSLLLTMGLL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  161 SSIVGGWGGLNQTQIRKLLAYSSITHLGWMIAVSKLSPNLTLFSFVIYTLITSTLFLAMIILNVKTIQDFSIAWSKSPPI 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  241 MLFTLLLLLSLGGLPPLTGFIPKLLIAQKLVNEDLTIYATVLFFSSLLSLFIYLRLSYILTITMAPHPFFSTAYWLnpHK 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWR--FK 318

                        330       340
                 ....*....|....*....|....
gi 37957440  321 PHISMIFSIMMTLSLFLTPIYPLV 344
Cdd:MTH00070 319 NKTNNLLSLTIILSLMLLPITPTI 342
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 18-342 6.79e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 331.77  E-value: 6.79e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   18 TITISSDHWILAWLGLEINTLAIIPLMASTYHPRAVEATTKYFLVQASASALLIFSCTMNAWVTGEWTISPHTETIPINL 97
Cdd:MTH00135  18 TLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTM 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   98 LATALMMKIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEISPsTNLSLLLTMGLLSSIVGGWGGLNQTQIRK 177
Cdd:MTH00135  98 ITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAP-TNPTLLITLGLTSTLVGGWGGLNQTQLRK 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  178 LLAYSSITHLGWMIAVSKLSPNLTLFSFVIYTLITSTLFLAMIILNVKTIQDFSIAWSKSPPIMLFTLLLLLSLGGLPPL 257
Cdd:MTH00135 177 ILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPL 256

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  258 TGFIPKLLIAQKLVNEDLTIYATVLFFSSLLSLFIYLRLSYILTITMAPHPFFSTAYWlNPHKPHISMIFSIMMTLSLFL 337
Cdd:MTH00135 257 TGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPW-RLPSTQLTLPLAISTTATLML 335


                 ....*
gi 37957440  338 TPIYP 342
Cdd:MTH00135 336 LPLTP 340
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-343 7.52e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 329.09  E-value: 7.52e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440    1 MNLYTIMLMILSLLLGSTITISSDHWILAWLGLEINTLAIIPLMASTYHPRAVEATTKYFLVQASASALLIFSCTMNAWV 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   81 TGEWTISPHTETIPINLLATALMMKIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEISPSTNLSLLLTMGLL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  161 SSIVGGWGGLNQTQIRKLLAYSSITHLGWMIAVSKLSPNLTLFSFVIYTLITSTLFLAMIILNVKTIQDFSIAWSKSPPI 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  241 MLFTLLLLLSLGGLPPLTGFIPKLLIAQKLVNEDLTIYATVLFFSSLLSLFIYLRLSYILTITMAPHPFFSTAYWLNPHK 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|...
gi 37957440  321 PHISMifSIMMTLSLFLTPIYPL 343
Cdd:MTH00112 321 KNTLT--ATLTTLSTLLLPLSPM 341
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 9.74e-93

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 280.58  E-value: 9.74e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440    1 MNLYTIMLMILSLLLGSTITISSDHWILAWLGLEINTLAIIPLMASTYHPRAVEATTKYFLVQASASALLIFSCTMNAWV 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   81 TGEWTISPHTETIPINLLATALMMKIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEISPSTNLSLLLTMGLL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  161 SSIVGGWGGLNQTQIRKLLAYSSITHLGWMIAVSKLSPNLTLFSFVIYTLITSTLFLAMIILNVKTIQDFSIAWSKSPPI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  241 MLFTLLLLLSLGGLPPLTGFIPKLLIAQKLVNEDLTIYATVLFFSSLLSLFIYLRLSYILTITMAPHPFFSTAYWLNPHK 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|....*.
gi 37957440  321 PHISMIfSIMMTLSLFLTPIYPLVSV 346
Cdd:MTH00105 321 KPMTLL-PTLIILSTMLLPLTPMLSI 345
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-345 2.34e-84

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 259.13  E-value: 2.34e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440    1 MNLYTIMLMILSLLLGSTITISSDHWILAWLGLEINTLAIIPLMASTYHPRAVEATTKYFLVQASASALLIFSCTMNAWV 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   81 TGEWTISPHTETIPINLLATALMMKIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEISPSTNLSLLLTMGLL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  161 SSIVGGWGGLNQTQIRKLLAYSSITHLGWMIAVSKLSPNLTLFSFVIYTLITSTLFLAMIILNVKTIQDFSIAWSKSPPI 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  241 MLFTLLLLLSLGGLPPLTGFIPKLLIAQKLVNEDLTIYATVLFFSSLLSLFIYLRLSYILTITMAPHPFFSTAYWLNphK 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRT--K 318

                        330       340
                 ....*....|....*....|....*
gi 37957440  321 PHISMIFSIMMTLSLFLTPIYPLVS 345
Cdd:MTH00200 319 SNSNLLVGLLLLLSILGLPLTPQLL 343
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 18-343 5.58e-71

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 224.81  E-value: 5.58e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   18 TITISSDHWILAWLGLEINTLAIIPLMASTYHPRAVEATTKYFLVQASASALLIFSCTMNAWVTGEWTISPHTETIPINL 97
Cdd:MTH00041  18 IIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSII 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   98 LATALMMKIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEISPSTNLSLLLTMGLLSSIVGGWGGLNQTQIRK 177
Cdd:MTH00041  98 ITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRK 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  178 LLAYSSITHLGWMIAVSKLSPNLTLFSFVIYTLITSTLFLAMIILNVKTIQDFSIAWSKSPPIMLFTLLLLLSLGGLPPL 257
Cdd:MTH00041 178 ILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  258 TGFIPKLLIAQKLVNEDLTIYATVLFFSSLLSLFIYLRLSYILTITMAPHPFFSTAYWLNPHKPHISMIF-SIMMTLSLF 336
Cdd:MTH00041 258 TGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVIlSILSSISIL 337


                 ....*..
gi 37957440  337 LTPIYPL 343
Cdd:MTH00041 338 GLLLIPL 344
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 19-343 5.14e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 159.60  E-value: 5.14e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   19 ITISSDHWILAWLGLEINTLAIIPLMASTYHPRAVEATTKYFLVQASASALLIFSCTMNAwvtgewTISPHTETIPINLL 98
Cdd:MTH00160  20 ISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM------LNLMLFNNISSMLI 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   99 ATALMMKIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLlleISPSTNLSLLLTMGLLSSIVGGWGGLNQTQIRKL 178
Cdd:MTH00160  94 NSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLIL---LSYLINNNFIIIIIILSAIIGAIGGLNQTSLRKI 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  179 LAYSSITHLGWMIAVSKLSPNLTLFSFVIYTLITSTLFLAMIILNVKTIQDFSIAWSKSPPIMLFTLLLLLSLGGLPPLT 258
Cdd:MTH00160 171 LAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFL 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  259 GFIPKLLIAQKLVNEDLTIYATVLFFSSLLSLFIYLRLSYILTITMaphpFFSTAYWLNPHKPHISMIFSIMMTLSLFLT 338
Cdd:MTH00160 251 GFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLN----YNKNKWNLKKKKNKFSLILNFLSFISLFGL 326


                 ....*
gi 37957440  339 PIYPL 343
Cdd:MTH00160 327 ILSSL 331
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 19-339 2.23e-41

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 147.23  E-value: 2.23e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   19 ITISSDHWILAWLGLEINTLAIIPLMASTYHPRAVEATTKYFLVQASASALLIFSCTMNawvtgeWTISPHTETIPINLL 98
Cdd:MTH00011  21 MALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMM------WSFPSLLKNITALML 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   99 ATALMMKIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEISPSTNLSLLLTMGLLSSIVGGWGGLNQTQIRKL 178
Cdd:MTH00011  95 LVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPL 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  179 LAYSSITHLGWMIAVSKLSPNLTLFSFVIYTLITSTLFLAMIILNVKTIQDFSIAWSKSPPIMLFTLLLLLSLGGLPPLT 258
Cdd:MTH00011 175 LAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFT 254

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  259 GFIPKLLIAQKLVNEDLTIYATVLFFSSLLSLFIYLRLsyILTITMAPHPFFSTAYWLNPHKphiSMIFSIMMTLSLFLT 338
Cdd:MTH00011 255 GFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNL--IFNFMYLSPTFSSLKSAPYEPK---TKILISMCTLSLGLI 329


                 .
gi 37957440  339 P 339
Cdd:MTH00011 330 P 330
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 19-337 3.22e-41

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 146.57  E-value: 3.22e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   19 ITISSDHWILAWLGLEINTLAIIPLMASTYHPRAVEATTKYFLVQASASALLIFSCTMNAWVTGEWTISPhtetipinLL 98
Cdd:MTH00144  19 LSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSMS--------LL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   99 ATALMMKIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEISPSTNLSLLLTMGLLS-SIVGGWGGLNQTQIRK 177
Cdd:MTH00144  91 LLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVLsALVGSIGGLNQTQVRA 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  178 LLAYSSITHLGWMIAVSKLSPNLTLFSFVIYTLITSTLFLAMIILNVKTIQDFSiAWSKSPPIMLFTLLLLLSLGGLPPL 257
Cdd:MTH00144 171 LLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLG-SLKPSYKTGLSIISLLLSLGGLPPF 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  258 TGFIPKLLIAQKLVNEDLTIYATVLFFSSLLSLFIYLRLSYILTITMAPHPFFSTAYWLNPhkphISMIFSIMMTLSLFL 337
Cdd:MTH00144 250 LGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNS----SIISLNLLGGLLFLL 325
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 18-341 3.44e-32

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 122.47  E-value: 3.44e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   18 TITISSDHWILAWLGLEINTLAIIPLMASTYHPRAVEATTKYFLVQASASALLIFSCTMNawvtgewTISPHTETIPINL 97
Cdd:MTH00197  12 LFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLS-------FSNLYLSLLSVVL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   98 LATALMMKIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEISpsTNLSLLLTMGLLSSIVGGWGGLNQTQIRK 177
Cdd:MTH00197  85 VILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNS--SSFMGLLICSVLSSLIGGIGGMNQSNIRQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  178 LLAYSSITHLGWMIAVSKLSPNLTLFSFVIYTLITSTLFLAMIILNVKTIQDFSIAWSKSPPIMLFTLLLLLSLGGLPPL 257
Cdd:MTH00197 163 LLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  258 TGFIPKLLIAQKLVNEDLTIYATVLFFSSLLSLFIYLRLSY---ILTITMAPHPFFSTAYWLNphkphisMIFSIMMTLS 334
Cdd:MTH00197 243 SGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYkslILSNWMINFLMKINLLYSG-------LFILLMMMLP 315


                 ....*..
gi 37957440  335 LFLTPIY 341
Cdd:MTH00197 316 LLMIFTM 322
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 21-235 4.34e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 90.09  E-value: 4.34e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   21 ISSDHWILAWLGLEINTLAIIPLMASTYHP-RAVEATTKYFLVQASASALLIFSCTMNAWVTGEWTI-----------SP 88
Cdd:MTH00196  10 ISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinlvlnsgqSF 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   89 HTETIPIN--LLATALMMKIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEISPSTNLSLLLTMGLLssIVGG 166
Cdd:MTH00196  90 SSVSVPIGylLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSL--FVGA 167

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 37957440  167 WGGLNQTQIRKLLAYSSITHLG---WMIAV-SKLSPNLTLFSFVIYtlITSTLFLAMIILNVKTIQDFSIAWS 235
Cdd:MTH00196 168 IGALNQTKIKRLLAYSGIGHMGfvlWGIEIgSFESIQASLVYLFIY--IIMSICVFSIILALNVYKNLIIEFS 238
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-217 5.53e-20

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 88.52  E-value: 5.53e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440    23 SDHWILAWLGLEINTLAIIPLMASTY-HPRAVEATTKYFLVQASASALLIFSCTMNAWVTG-----------EWTISPHT 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGkSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGtlsfdelskalTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440    91 ETIPINLLATALMMKIGIAPFHFWLPDVMQGISLHAGLIL-STWQKLPPI-----VLLLEISPSTNLSLLLTMGLLSSIV 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 37957440   165 GGWGGLNQTQIRKLLAYSSITHLGWMIAVSKLSPN----LTLFSFVIYTLITSTLFL 217
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiqAAIFHLLTHGLFSAGLFL 217
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 19-244 6.59e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 90.08  E-value: 6.59e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   19 ITISSDHWILAWLGLEINTLAIIPLMA-STYHPRAVEATTKYFLVQASASALLIFSCTMNAWVTGEWTI----SPHTETI 93
Cdd:MTH00199 112 LLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSILTGDV 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   94 PINLLATALMMKIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEISPSTNLSLLLTMGLLssIVGGWGGLNQT 173
Cdd:MTH00199 192 GKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSI--IYGAIGALNQT 269

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 37957440  174 QIRKLLAYSSITHLGWMI---AV-SKLSPNLTLFSFVIYTLITSTLFLamIILNVKTIQDFSI---AWSKSPPIMLFT 244
Cdd:MTH00199 270 KIKRLLAYSGIGHMGFILfgvAIgSFESIQASLIYMIIYVIMSICSFS--IILSLKLTKGLIVevsGLSRKNPVIALT 345
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 21-222 3.73e-17

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 82.09  E-value: 3.73e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  21 ISSDHWILAWLGLEINTLAIIPLMASTY-HPRAVEATTKYFLVQASASALLIFSCTMNAWVTGE-------WTISPHTET 92
Cdd:COG1007 119 ASANDLLTLFLGLELLSLSLYVLVAFRRdDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSlnlagiaAALAAGGAN 198

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  93 IPINLLATALMM-----KIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEISPSTNLSLLLTMGLLSSI---- 163
Cdd:COG1007 199 SPLLLLGLVLVLaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLAADWQLLLAVlavl 278

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 37957440 164 ---VGGWGGLNQTQIRKLLAYSSITHLGWM----IAVSKLSPNLTLFSFVIYTLITSTLFLAMIIL 222
Cdd:COG1007 279 smtVGNLAALAQTNVKRMLAYSSIAHAGYLllglAAGTPLGVSAALFYLLAYLFMNLGAFAVILLL 344
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 21-300 2.05e-15

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 76.91  E-value: 2.05e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440    21 ISSDHWILAWLGLEINTLAIIPLMASTYHPR-AVEATTKYFLVQASASALLIFSCTMNAWVTGEWTISP-----HTETIP 94
Cdd:TIGR01770 119 VSSNDLLSIYLGLELQSLCFYVLAGLKRKSRfSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDlllflSNGMLN 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440    95 INLLA-------TALMMKIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEISPS-------TNLSLLLTMGLL 160
Cdd:TIGR01770 199 ISLLLlgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYilfgfseAWQIFLAIIAFL 278

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   161 SSIVGGWGGLNQTQIRKLLAYSSITHLGW-MIAVSKLSPNL---TLFSFVIYTLITSTLFLAMIILN------VKTIQDF 230
Cdd:TIGR01770 279 SMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGikaVLFYIFIYALMSLGAFGVLSLLRsykdewIEYISDF 358

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   231 SIAWSKSPPIMLFTLLLLLSLGGLPPLTGFIPKLLIAQKLVNEDLTIYATVLFFSSLLSLFIYLRLSYIL 300
Cdd:TIGR01770 359 AGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVM 428
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 21-194 1.42e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 71.43  E-value: 1.42e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   21 ISSDHWILAWLGLEINTLAIIPLMASTYHPRAV---------EATTKYFLVQASASALLIFSCTMNAWVTGE-----WTI 86
Cdd:MTH00198 205 IESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNegmlgTIL 284

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   87 SPHTETIPINL---------LATALMMKIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEISPSTNLSLLLTM 157
Cdd:MTH00198 285 SATLETTNIELrqgslgylfITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLLLSVAI 364

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 37957440  158 GLLssIVGGWGGLNQTQIRKLLAYSSITHLGW-MIAVS 194
Cdd:MTH00198 365 ISL--VVGAFGALNQTRIKRLLAYSGIGHIGFiLIGVS 400
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
19-276 2.32e-12

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 67.54  E-value: 2.32e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   19 ITISSDHWILAWLGLEINTLAIIPLMASTY-HPRAVEATTKYFLVQASASALLIFSCTMNAWVTGEWTISP-----HTET 92
Cdd:PRK05777 118 VMVSANDLLTLFLGLELLSLPLYALAALRRdRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGiakalADGS 197

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   93 IPINLLATALMM-------KIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEI-------SPSTNLSLLLTMG 158
Cdd:PRK05777 198 GNSLLLLFGLVFllvglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvafggLSEDWQQVLAIIA 277

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  159 LLSSIVGGWGGLNQTQIRKLLAYSSITHLGWM----IAVSKLSPNLTLFSFVIYtLITSTLFLAMIIL------NVKTIQ 228
Cdd:PRK05777 278 IASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvglAAGTAEGYSAVLFYLLAY-LFMTLGAFGVISLlrrkggEAESIS 356

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 37957440  229 DFSIAWSKSPPIMLFTLLLLLSLGGLPPLTGFIPKLLIAQKLVNEDLT 276
Cdd:PRK05777 357 DFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLW 404
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-281 1.54e-09

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 59.01  E-value: 1.54e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  30 WLGLEINTLAIIPLMASTYHPRAVEATTKYFLVQASASALLIFSCTMNAWVTGEW----------TISPHTETIPINLLA 99
Cdd:COG0651 133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLnmadlaarlaELDPGLLLAAFALLL 212

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440 100 TALMMKIGIAPFHFWLPD-----------VMQGISLHAGL--ILSTWQKLPPIVLLLEISPstnlsLLLTMGLLSSIVGG 166
Cdd:COG0651 213 VGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLGT-----LLLVLGLLTMLVGA 287

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440 167 WGGLNQTQIRKLLAYSSITHLGWMIAVSKLSPNLTLFSFVIY----TLITSTLFLA----MIILNVKTIQDFSIAWSKSP 238
Cdd:COG0651 288 LGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiERATGTRDLDKLGGLGKRMP 367

                       250       260       270       280
                ....*....|....*....|....*....|....*....|...
gi 37957440 239 PIMLFTLLLLLSLGGLPPLTGFIPKLLIAQKLVNEDLTIYATV 281
Cdd:COG0651 368 LTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAV 410
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-191 6.25e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 50.87  E-value: 6.25e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   33 LEINTLAIIPLMA-STYHPRAVEATTKYFLVQASASALLIF----------SCTMnAWVTGEWTISPH-TETIPINLLAT 100
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLgiallygqygTLNM-AYLAVKMSENPTvVAKIALALFIA 228

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  101 ALMMKIGIAPFHFWLPDV--MQGISLHAGLILSTWQKLPPI------VLLLEISPSTNLSLLLTMGLLSSIVGGWGGLNQ 172
Cdd:PRK08376 229 GLAMKSGAVPVHMWLPDAypAAPSSISAMLLVIKQAGLYALarvlfsIYGPAINLATVGWVIIILGCLTMFVGVAMAVVQ 308

                        170
                 ....*....|....*....
gi 37957440  173 TQIRKLLAYSSITHLGWMI 191
Cdd:PRK08376 309 KDVKRLLAYHSVSQIGYML 327
PRK12650 PRK12650
DUF4040 family protein;
82-221 1.01e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 50.43  E-value: 1.01e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   82 GEWTISPHTETIPINLLATALMMKIGIAPFHFWLPDVMQGIS-----LHAGLILSTwqklpPIVLLLEISP-----STNL 151
Cdd:PRK12650 198 DVWAEKPGLTTVVAVLIAVAAFTKSAQFPFHFWLPEAMAAITpvsafLHAAAVVKA-----GIYLLLRFSPvfhdvAVWN 272

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 37957440  152 SLLLTMGLLSSIVGGWGGLNQTQIRKLLAYSSITHLGWMIAVSKLSPNLTLFSFVIYT----LITSTLFlaMII 221
Cdd:PRK12650 273 WLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLF--MLI 344
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 3.26e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 48.54  E-value: 3.26e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  49 HPRAVEATTKYFLVQASASALLIFSCTMNAWVTGEWT----------ISPHTETIPINLLATALMMKIGIAPFHFWLPDV 118
Cdd:COG1008 156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTfdiaelaaapLPLTAQLLLFLAFFIAFAVKVPMFPFHTWLPDA 235

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440 119 MQ----GIS-LHAGLIL----------------STWQKLPPIVLLLEIspstnlsllltmglLSSIVGGWGGLNQTQIRK 177
Cdd:COG1008 236 HVeaptAGSvLLAGVLLkmggygllrfalplfpEASAYFAPLLAALGV--------------IGIIYGALVALAQTDLKR 301

                       170
                ....*....|....*
gi 37957440 178 LLAYSSITHLGWMIA 192
Cdd:COG1008 302 LIAYSSVSHMGFVLL 316
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-281 3.18e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 45.64  E-value: 3.18e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   33 LEINTLAIIPLMASTYHPRAVEATTKYFLVQASASALLIFSCTMNAWVTGEWTISPHTETIPIN--------LLATALMM 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALAENptvvtafgFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  105 KIGIAPFHFWLPDVMQGIS-----LHAGLILstwqKLPPIVLLL---------EISPSTNLSLLLTMGLLSSIVGGWGGL 170
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPpvvtaLLSGLVT----KVAVYALIRiyftvfggdFRFALGLGWLLAVLALLSMLVGSLAAL 290

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  171 NQTQIRKLLAYSSITHLGWMIA-VSKLSPNL---TLFSFVIYTLITSTLFLA----MIILNVKTIQDFSIAWSKSPPIML 242
Cdd:PRK08375 291 GQDDVKRVLAYSTVSQMGYILLgLALLTPLAlaaGLLHLLHHALMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAA 370

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 37957440  243 FTLLLLLSLGGLPPLTGFIPKLLIAQKLVNEDLTIYATV 281
Cdd:PRK08375 371 AFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAV 409
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 18-222 3.51e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 42.43  E-value: 3.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   18 TITISSDHWILAWLGLEINTLAIIPLMASTYHPRAVEATTKYFLVQASA------SALLIFSCTMNAWVTG--EWT---- 85
Cdd:PRK08676 116 TFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGtlNWTelaa 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   86 ----ISPHTETIPINLLATALMMKIGIAPFHFWLPDVMQGISLHAGLILSTWQKLPPIVLLLEISPSTNLSLLLTMGLLS 161
Cdd:PRK08676 196 haslLSPSVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSGAAEQFSNV 275

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 37957440  162 SIVGG--------WGGLNQTQIRKLLAYSSITHLGWM---IAV-SKLSPNLTLFSFVIYTLITSTLFLAMIIL 222
Cdd:PRK08676 276 LIGLGifsiavaaFSMLSQRNLKKLIAFSSIEHMGLMllgIGIgTPLALFWMLFHMLAHSLVKSGLFFSAGIL 348
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 97-193 3.93e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 42.22  E-value: 3.93e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   97 LLATALMmKIGIAPFHFWLPDVMQG---IS--LHAG--------LI---------LSTWQklpPIVLLLEIspstnlsll 154
Cdd:PRK12644 209 ILVGALS-KSAIVPFHFWLPGAMAAptpVSayLHAAamvkagiyLVarlapgfadVPVWR---PTVLVLGL--------- 275

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 37957440  155 ltmglLSSIVGGWGGLNQTQIRKLLAYSSITHLGWMIAV 193
Cdd:PRK12644 276 -----ATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVL 309
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
18-129 1.43e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 40.45  E-value: 1.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   18 TITISSDHW---ILAWL--GLEINTLaiipLMASTYHPRAVEATTKYFLVQASASALLIFSCTMNAWVTGEWTISP---- 88
Cdd:PRK08168 114 HLLVLSDHLlvlIAAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSAlwah 189

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 37957440   89 -------HTETIPINLLATALMMKIGIAPFHFWLPDVMQG---IS--LHAGLI 129
Cdd:PRK08168 190 laaqgasPSLQAAALLLVLAVILKTAQLPVHGWLIQVMEAptpVSalLHAGVV 242
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-217 1.57e-03

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 40.31  E-value: 1.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440    50 PRAVEATTKYFLVQASASALLIFSCTMNAWVTG---------EWTISPHTETIPINLLATALMMKIGIAPFHFWLPDVMQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllellNLPLPFGVQTWLFLAFFIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   121 -----GISLHAGLILstwqKLPP---IVLLLEISPSTNLSLLLTMGLL---SSIVGGWGGLNQTQIRKLLAYSSITHLGW 189
Cdd:TIGR01972 232 eaptaGSVILAGVLL----KMGTygfLRFNLPLFPDASLYFAPVLAALgviAIIYGALIALAQTDIKRLIAYSSISHMGF 307

                         170       180       190
                  ....*....|....*....|....*....|..
gi 37957440   190 MI----AVSKLSPNLTLFSFVIYTLITSTLFL 217
Cdd:TIGR01972 308 VLlgifSFNELGISGAVFQMISHGLITAALFL 339
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-266 3.98e-03

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 38.83  E-value: 3.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   51 RAVEATTKYFLVQASASALLI---------------FSCTMNAWVTGEWTISPHTETIPINLLAtALMMKIGIAPFHFWL 115
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygfswlyglsggeieLQEIVNGLINTQMYNSPGISIALIFITV-GIGFKLSLAPFHQWT 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  116 PDVMQG-----------ISLHAGLILSTwqklPPIVLLLEISPSTNLSLLLTMGLLSSIVGGWGGLNQTQIRKLLAYSSI 184
Cdd:CHL00049 238 PDVYEGsptpvvaflsvTSKVAASALAT----RIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSI 313

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  185 THLGW-MIAVSKLSPNLTLFSFVIYTLITSTL----FLAMIILNVKT----IQDFSIAWSKSPPIMLFTLLLLLSLGGLP 255
Cdd:CHL00049 314 GQIGYvIIGIIVGDSNDGYASMITYMLFYIFMnlgtFACIVLFGLRTgtdnIRDYAGLYTKDPFLALSLALCLLSLGGIP 393

                        250
                 ....*....|.
gi 37957440  256 PLTGFIPKLLI 266
Cdd:CHL00049 394 PLAGFFGKLYL 404
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-264 4.95e-03

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 38.49  E-value: 4.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   50 PRAVEATTKYFLVQASASALLIFSCTMNAWVTGEWT----ISPHTETIPINLLATALMM-------KIGIAPFHFWLPDV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGGSTqlsaIALALITSPSLGLALALVFviagiafKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  119 MQGISLHAGLILSTWQKLP----PIVLLLEISPSTNL---SLLLTMGLLSSIVGGWGGLNQTQIRKLLAYSSITHLGW-- 189
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvm 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  190 --MIAVSKLSPNLTLFSFVIYTLITSTLFLAMIILNVKT----IQDFSIAWSKSPPIMLFTLLLLLSLGGLPPLTGFIPK 263
Cdd:PRK02504 317 igLVAGTEAGYASMVFYLLAYLFMNLGAFACVILFSLRTgtdqISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396


                 .
gi 37957440  264 L 264
Cdd:PRK02504 397 I 397
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 110-192 7.23e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 38.21  E-value: 7.23e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440 110 PFHFWLPDVMQG---IS--LH------AG--LILstwqKLPPIvllLEISPSTNLSLLLTMGLLSsIVGGWGGLNQTQIR 176
Cdd:COG1009 229 PLHFWLPDAMEGptpVSalLHaatmvkAGvyLLA----RLSPL---FALSPVWLTVVAIIGAITA-LFAALIALAQTDIK 300

                        90
                ....*....|....*.
gi 37957440 177 KLLAYSSITHLGWMIA 192
Cdd:COG1009 301 RVLAYSTVSQLGYMFL 316
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
38-226 7.89e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 38.14  E-value: 7.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440   38 LAIIPL---MASTYHPRAVEATTKYFLVQASASALLIFSCTMNAWVTGEWTISPHT---ETIPIN----LLATALM---M 104
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPlrsHTLPLStqllLLAPILVgfgI 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37957440  105 KIGIAPFHFWLPD-----------VMQGISLHAG----------LILSTWQKLPPIVLLLEIspstnlsllltmglLSSI 163
Cdd:PRK06473 218 KIPLVPFHTWLPDahveastpvsvLLAGVLLKLGtygllrfgvgLFPEAWVYLAPWLATWAV--------------VSVL 283

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 37957440  164 VGGWGGLNQTQIRKLLAYSSITHLGWMI----AVSKLSPNLTLFSFVIYTLITSTLFLAMIILNVKT 226
Cdd:PRK06473 284 YGASCAIAQKDMKKMVAYSSIGHMGYILlaaaAATPLSILAAVFQMISHGLISALLFLLVGVVYKKT 350
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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