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Conserved domains on  [gi|30314438|gb|AAP15428|]
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outer membrane lipoprotein precursor, partial [Burkholderia cepacia]

Protein Classification

OmpA family protein( domain architecture ID 10798633)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes, similar to Pseudomonas aeruginosa peptidoglycan-associated lipoprotein that is involved in maintenance of the integrity of the cell cell envelope

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 45-148 2.57e-62

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


:

Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 186.61  E-value: 2.57e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438    45 SIYFDFDSYSVKDDYQSLMQQHAQYLKSHPQRHVLIQGNTDERGTSEYNLALGQKRAEAVRRAMALLGVNDSQMEAVSLG 124
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|....
gi 30314438   125 KEKPQATGHDEASWAQNRRADLVY 148
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLVY 104
 
Name Accession Description Interval E-value
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 45-148 2.57e-62

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 186.61  E-value: 2.57e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438    45 SIYFDFDSYSVKDDYQSLMQQHAQYLKSHPQRHVLIQGNTDERGTSEYNLALGQKRAEAVRRAMALLGVNDSQMEAVSLG 124
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|....
gi 30314438   125 KEKPQATGHDEASWAQNRRADLVY 148
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLVY 104
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 45-147 2.10e-39

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 128.44  E-value: 2.10e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438  45 SIYFDFDSYSVKDDYQSLMQQHAQYLKSHPQRHVLIQGNTDERGTSEYNLALGQKRAEAVRRAMALLGVNDSQMEAVSLG 124
Cdd:cd07185   3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                        90       100
                ....*....|....*....|...
gi 30314438 125 KEKPQATGHDEASWAQNRRADLV 147
Cdd:cd07185  83 ESRPIASNDTEEGRAKNRRVEIV 105
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 6-149 6.62e-39

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 133.37  E-value: 6.62e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438   6 KLDDKANNAGAVSTQPSADNVAQVNVDPLNDPNSPLAKRsIYFDFDSYSVKDDYQSLMQQHAQYLKSHPQRHVLIQGNTD 85
Cdd:COG2885 150 KALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSN-VYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTD 228

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 30314438  86 ERGTSEYNLALGQKRAEAVRRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRRADLVYQ 149
Cdd:COG2885 229 SRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVL 292
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
3-148 2.61e-36

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 123.06  E-value: 2.61e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438    3 SGVKLDDKANNAGAVSTQPSADNVAQVNVDPLNDPNSplakrsIYFDFDSYSVKDDYQSLMQQHAQYLKSHPQRHVLIQG 82
Cdd:PRK10802  34 EGMLGAGTGMDANGGNGNMSSEEQARLQMQQLQQNNI------VYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEG 107

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30314438   83 NTDERGTSEYNLALGQKRAEAVRRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRRADLVY 148
Cdd:PRK10802 108 HADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRRAVLVY 173
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 48-141 2.72e-18

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 74.32  E-value: 2.72e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438    48 FDFDSYSVKDDYQSLMQQHAQYLKSHPQRH-VLIQGNTDERGTSEYNLALGQKRAEAVRRAMALLGVNDSQMEAVSLGKE 126
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNtITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 30314438   127 KPQATGHDEASWAQN 141
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
 
Name Accession Description Interval E-value
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 45-148 2.57e-62

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 186.61  E-value: 2.57e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438    45 SIYFDFDSYSVKDDYQSLMQQHAQYLKSHPQRHVLIQGNTDERGTSEYNLALGQKRAEAVRRAMALLGVNDSQMEAVSLG 124
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|....
gi 30314438   125 KEKPQATGHDEASWAQNRRADLVY 148
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLVY 104
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 45-147 2.10e-39

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 128.44  E-value: 2.10e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438  45 SIYFDFDSYSVKDDYQSLMQQHAQYLKSHPQRHVLIQGNTDERGTSEYNLALGQKRAEAVRRAMALLGVNDSQMEAVSLG 124
Cdd:cd07185   3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                        90       100
                ....*....|....*....|...
gi 30314438 125 KEKPQATGHDEASWAQNRRADLV 147
Cdd:cd07185  83 ESRPIASNDTEEGRAKNRRVEIV 105
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 6-149 6.62e-39

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 133.37  E-value: 6.62e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438   6 KLDDKANNAGAVSTQPSADNVAQVNVDPLNDPNSPLAKRsIYFDFDSYSVKDDYQSLMQQHAQYLKSHPQRHVLIQGNTD 85
Cdd:COG2885 150 KALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSN-VYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTD 228

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 30314438  86 ERGTSEYNLALGQKRAEAVRRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRRADLVYQ 149
Cdd:COG2885 229 SRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVL 292
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
3-148 2.61e-36

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 123.06  E-value: 2.61e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438    3 SGVKLDDKANNAGAVSTQPSADNVAQVNVDPLNDPNSplakrsIYFDFDSYSVKDDYQSLMQQHAQYLKSHPQRHVLIQG 82
Cdd:PRK10802  34 EGMLGAGTGMDANGGNGNMSSEEQARLQMQQLQQNNI------VYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEG 107

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30314438   83 NTDERGTSEYNLALGQKRAEAVRRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRRADLVY 148
Cdd:PRK10802 108 HADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRRAVLVY 173
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 48-141 2.72e-18

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 74.32  E-value: 2.72e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438    48 FDFDSYSVKDDYQSLMQQHAQYLKSHPQRH-VLIQGNTDERGTSEYNLALGQKRAEAVRRAMALLGVNDSQMEAVSLGKE 126
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNtITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 30314438   127 KPQATGHDEASWAQN 141
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
PRK10510 PRK10510
OmpA family lipoprotein;
6-146 5.40e-14

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 66.44  E-value: 5.40e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438    6 KLDDKANNAGaVSTQPSADNVAqvnvdpLNDPNSplakrsIYFDFDSYSVKDDYQSLMQQHAQYLKSHPQRHVLIQGNTD 85
Cdd:PRK10510  87 KLRDKMRGTG-VSVTRSGDNII------LNMPNN------VTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTD 153

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 30314438   86 ERGTSEYNLALGQKRAEAVRRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRRADL 146
Cdd:PRK10510 154 STGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMGPANPIASNSTAEGKAQNRRVEI 214
MotB COG1360
Flagellar motor protein MotB [Cell motility];
45-147 9.59e-14

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 64.87  E-value: 9.59e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438  45 SIYFDFDSYSVKDDYQSLMQQHAQYLKSHPQRhVLIQGNTDER--GTSEY--NLALGQKRAEAVRRAMALLGVNDSQMEA 120
Cdd:COG1360  60 RVLFDSGSAELTPEGRELLDKIAAVLAEVPNR-IRVEGHTDNVpiSTARFpsNWELSAARAAAVVRYLIEGGVPPERLSA 138

                        90       100
                ....*....|....*....|....*..
gi 30314438 121 VSLGKEKPQATGHDEASWAQNRRADLV 147
Cdd:COG1360 139 VGYGDTRPLAPNDTPEGRARNRRVEIV 165
PRK09967 PRK09967
OmpA family protein;
45-147 4.67e-10

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 54.60  E-value: 4.67e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438   45 SIYFDFDSYSVKDDYQSLMQQHAQYLKSHPQRHVLIQGNTDERGTSEYNLALGQKRAEAVRRAMALLG-VNDSQMEAVSL 123
Cdd:PRK09967  53 AILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGqIPRSNLTTQGL 132

                         90       100
                 ....*....|....*....|....
gi 30314438  124 GKEKPQATGHDEASWAQNRRADLV 147
Cdd:PRK09967 133 GKKYPIASNKTAQGRAENRRVAVV 156
PRK09040 PRK09040
hypothetical protein; Provisional
 61-143 8.76e-07

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 46.55  E-value: 8.76e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438   61 SLMQQHAQYLKSHPQRhVLIQGNTDER----GTSEY--NLALGQKRAEAVRRAMALLGVNDSQMEAVSLGKEKPQATGHD 134
Cdd:PRK09040 109 SLAGPLAAYLRARDEI-LMVSGFTDDQpvraGNRRFadNWELSAQRALTVTRALIDAGVPASSVFAAAFGSEQPVASNAD 187


                 ....*....
gi 30314438  135 EASWAQNRR 143
Cdd:PRK09040 188 DEGRAKNRR 196
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 24-143 8.45e-05

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 40.82  E-value: 8.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438   24 DNVAQVNVDPLNDPNSPLAKRSIYFDFDSYSVKDDYQSLMQQHAQYLKSHPQRhVLIQGNTDERGTSE----YNLALGQK 99
Cdd:PRK06742  95 NGISQVNVYREDTGVSVVIVDNLIFDTGDANVKPEAKEIISQLVGFFQSVPNP-IVVEGHTDSRPIHNdkfpSNWELSSA 173

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 30314438  100 RA-EAVRRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRR 143
Cdd:PRK06742 174 RAaNMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWEKNRR 218
PRK07033 PRK07033
DotU family type VI secretion system protein;
48-147 1.13e-04

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 40.80  E-value: 1.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438   48 FDFDSYSVKDDYQSLMQQHAQYLKSHPQRhVLIQGNTDER--GTSEY--NLALGQKRAEAVRRAMALLGVNDSQMEAVSL 123
Cdd:PRK07033 318 FASASTSVRDRYQPVLARVADALNQVKGN-VLVTGYSDNVpiRTARFpsNWELSQARAQAVRALLAARLGQPERVTAEGR 396

                         90       100
                 ....*....|....*....|....
gi 30314438  124 GKEKPQATGHDEASWAQNRRADLV 147
Cdd:PRK07033 397 GDSDPVAPNDSAENRARNRRVEIT 420
PRK10808 PRK10808
outer membrane protein A; Reviewed
 43-128 1.26e-04

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 40.83  E-value: 1.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438   43 KRSIYFDFDSYSVK-DDYQSLMQQHAQYLKSHPQR-HVLIQGNTDERGTSEYNLALGQKRAEAVRRAMALLGVNDSQMEA 120
Cdd:PRK10808 223 KSDVLFNFNKATLKpEGQQALDQLYSQLSNLDPKDgSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISA 302


                 ....*...
gi 30314438  121 VSLGKEKP 128
Cdd:PRK10808 303 RGMGKSNP 310
motB PRK08457
flagellar motor protein MotB; Reviewed
 50-144 1.40e-04

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 40.47  E-value: 1.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438   50 FDSYSVK---DDYQSLMQQHAQYLKSHPQR-HVLIQGNTD--ERGTSEY--NLALGQKRAEAVRRAMALLGVNDSQMEAV 121
Cdd:PRK08457 126 FENGSAEiinADMMDYLKRIAKIITKLPKQvKINVRGYTDnsPLNKSRYkdHYELAAARAYNVMKVLIQYGINPNRLSFS 205

                         90       100
                 ....*....|....*....|...
gi 30314438  122 SLGKEKPQATGHDEASWAQNRRA 144
Cdd:PRK08457 206 SYGSNNPIAPNDSLENRLKNNRV 228
PRK09039 PRK09039
peptidoglycan -binding protein;
82-146 2.24e-03

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 36.87  E-value: 2.24e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438   82 GNTDER---GTSEY--NLALGQKRAEAVRRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRRADL 146
Cdd:PRK09039 269 GHTDNVplsGTGRFrdNWELSSARAISVVKFLIALGVPADRLAAAGFGEFQPLDPGDTPEARARNRRIEL 338
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 50-147 2.48e-03

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 36.91  E-value: 2.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438   50 FDSYSVKDDYQSL--MQQHAQYLKSHPQrHVLIQGNTDER--GTSEY--NLALGQKRAEAVRRAMALLGVNDSQMEAVSL 123
Cdd:PRK09038 137 FGSGDAMLSDQAFaiLEKVAEVLKPAPN-PIHVEGFTDNVpiATAQFpsNWELSAARAASVVRLLADDGVAPSRLAAVGY 215

                         90       100
                 ....*....|....*....|....
gi 30314438  124 GKEKPQATGHDEASWAQNRRADLV 147
Cdd:PRK09038 216 GEFQPVADNDTAEGRARNRRVVLV 239
PRK08126 PRK08126
hypothetical protein; Provisional
 78-143 5.44e-03

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 35.82  E-value: 5.44e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30314438   78 VLIQGNTDER--GTSEY--NLALGQKRAEAVRRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRR 143
Cdd:PRK08126 356 VTVTGHTDNQpiRSAQFasNLVLSEKRAAQVAQMLQSAGVPASRLEAVGKGDAQPVADNRTPQGRAQNRR 425
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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