|
Name |
Accession |
Description |
Interval |
E-value |
| Lactonase |
pfam10282 |
Lactonase, 7-bladed beta-propeller; This entry contains bacterial 6-phosphogluconolactonases ... |
37-377 |
1.59e-148 |
|
Lactonase, 7-bladed beta-propeller; This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold.
Pssm-ID: 431196 [Multi-domain] Cd Length: 340 Bit Score: 423.56 E-value: 1.59e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 37 TMIVGTYTSGDSKGLYSFRFNEENGTATALSE-AEVENPSYLVPSADGKFIYAVSEFsNEQAAANAFAFNKEEGTFRLLN 115
Cdd:pfam10282 1 TLYVGTYTKGDSKGIYVLTLDTETGALTLLGLvAEVGNPSYLALSPDGRTLYAVNEE-GDQGGVAAFRIDPDSGALTLLN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 116 TQKTGGEDPCYIIT--NGSNVVTANYSGGSISVFPIDKDGSLLPASEVVKFKGSGADKERQEKPHLHCVRITPDGKYLFA 193
Cdd:pfam10282 80 QVPTGGASPCHLSVdpDGRFLFVANYHGGSVSVFPLDADGSLGELSQVVQHEGSGPPPERQESPHPHSVDLTPDGKFLVV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 194 DDLGTDQIHKFivnpnaKADNEDVFLKEgsPASYKVEAGSGPRHLTFAPNGSYAYLINELSGTVIAFEYN--DGELKEIQ 271
Cdd:pfam10282 160 PDLGTDRVRVY------KLDAGGGKLTP--PASVQTPPGSGPRHLAFHPNGKYAYVVNELSSTVTVFEYDpaTGTFEELQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 272 ---TIAADTVGAKGSGDIHISPDGKFLYASNRLkADGLAIFSIHPENGMLTKVGYQLT-GIHPRNFIITPNGKYLLVACR 347
Cdd:pfam10282 232 tvsTLPEGFTGTNGAAAIRVSPDGKFLYVSNRG-HDSIAVFAVDEAGGTLTLVERVSTeGDFPRDFNIDPDGKFLVVANQ 310
|
330 340 350
....*....|....*....|....*....|
gi 29341718 348 DSNVIQVYERDTDTGLLTDIRKDIKVDKPV 377
Cdd:pfam10282 311 DSDNVTVFRRDPETGKLTLLGKDIEVPEPV 340
|
|
| Pgl |
COG2706 |
6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism]; |
35-382 |
9.99e-145 |
|
6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism];
Pssm-ID: 442025 [Multi-domain] Cd Length: 352 Bit Score: 414.30 E-value: 9.99e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 35 DLTMIVGTYTSGDSKGLYSFRFNEENGTATALSE-AEVENPSYLVPSADGKFIYAVSE--------FSNEqaaanafafn 105
Cdd:COG2706 7 STFVYVGTYTSGESEGIYVFRLDTATGELTLLGLvAALGNPSFLALSPDGRFLYAVNEvddggvsaFRID---------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 106 KEEGTFRLLNTQKTGGEDPCYIIT--NGSNVVTANYSGGSISVFPIDKDGSLLPASEVVKFKGSGADKERQEKPHLHCVR 183
Cdd:COG2706 77 PADGTLTLLNTVSSGGASPCHLSVdpDGRFLFVANYGGGSVSVFPIDADGSLGEPVQVIQHEGSGPNPERQEGPHAHSVV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 184 ITPDGKYLFADDLGTDQIHKFIVNPNAKAdnedvfLKEgsPASYKVEAGSGPRHLTFAPNGSYAYLINELSGTVIAFEYN 263
Cdd:COG2706 157 FDPDGRFLYVPDLGTDRIYVYRLDPATGK------LPE--PPEVSLPPGSGPRHLAFHPNGRFAYVINELDSTVSVYAYD 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 264 --DGELKEIQTIAA---DTVGAKGSGDIHISPDGKFLYASNRLkADGLAIFSIHPENGMLTKVGYQLT-GIHPRNFIITP 337
Cdd:COG2706 229 aaTGTLTLIQTVSTlpeDFTGENWAADIHISPDGRFLYVSNRG-HNSIAVFAIDADGGKLTLVGHVPTgGKWPRDFAIDP 307
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 29341718 338 NGKYLLVACRDSNVIQVYERDTDTGLLTDIRKDIKVDKPVCIKFV 382
Cdd:COG2706 308 DGRFLLVANQKSDNITVFRIDADTGKLTPTGRSVPVPSPVCVAFL 352
|
|
| PRK11028 |
PRK11028 |
6-phosphogluconolactonase; Provisional |
124-367 |
1.10e-52 |
|
6-phosphogluconolactonase; Provisional
Pssm-ID: 182912 [Multi-domain] Cd Length: 330 Bit Score: 177.84 E-value: 1.10e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 124 PCYIITN--GSNVVTANYSGGSISVFPIDKDGSLLPASEVVKfkgsgadkerqEKPHLHCVRITPDGKYLFADDLGTDQI 201
Cdd:PRK11028 82 PTHISTDhqGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-----------GLEGCHSANIDPDNRTLWVPCLKEDRI 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 202 HKFIVNpnakadnEDVFLKEGSPASYKVEAGSGPRHLTFAPNGSYAYLINELSGTVIAFEYND--GELKEIQTI---AAD 276
Cdd:PRK11028 151 RLFTLS-------DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDphGEIECVQTLdmmPAD 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 277 TVGAKGSGDIHISPDGKFLYASNRLkADGLAIFSIHPENGMLTKVGYQLTGIHPRNFIITPNGKYLLVACRDSNVIQVYE 356
Cdd:PRK11028 224 FSDTRWAADIHITPDGRHLYACDRT-ASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302
|
250
....*....|.
gi 29341718 357 RDTDTGLLTDI 367
Cdd:PRK11028 303 IDGETGLLTEL 313
|
|
| 8prop_heme_binding_protein |
cd20718 |
eight-bladed beta-propeller heme-binding domain in cytochrome cd1 and similar proteins; ... |
110-376 |
4.93e-04 |
|
eight-bladed beta-propeller heme-binding domain in cytochrome cd1 and similar proteins; Members here contain an 8-bladed beta-propeller heme-binding domain in cytochrome cd1 (nitrite reductase) and similar proteins including NirN and NirF. During denitrification, nitrate (Nar), nitrite (Nir), nitric oxide (Nor), and nitrous oxide (Nos) reductases catalyze the reaction cascade of NO(3-)-> NO(2-)-> NO -> N2O -> N2. The integral membrane proteins NorC, NorB, and NosR form the core assembly platform that binds the nitrate reductase NarGHI and the periplasmic nitrite reductase NirS via its maturation factor NirF. NirN and NirF form a stable complex with the nitrite reductase NirS during enzyme maturation. NirF is involved in heme d1 insertion.
Pssm-ID: 467720 [Multi-domain] Cd Length: 380 Bit Score: 41.94 E-value: 4.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 110 TFRLLNTQKTGGEDPCYIITNGSNVVTANYSGGSIsVFPIDKDGSLLpaseVVKFKGSGADK---ERQEKPHLHCVRITP 186
Cdd:cd20718 131 TLEPLKVIPTTGVNDDGIIESRVGAILETPPGPYF-LVALKDAGSVW----VIDYSDPDGNKvtdIGNIGRPLHDAFLDP 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 187 DGKYlfaddlgtdqihkFIVNPNAkadnEDVF----LKEGSPASyKVEAGSGPrHL---TFAPNGSYAYL--INELSGTV 257
Cdd:cd20718 206 DGRY-------------FIVASQG----SNTMwvldLKTGKVVA-RIPTGKTP-HPgpgATWGRKGVTATphLGEGIVTV 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 258 IAFEYNDgELKEIQT---------------IAADTV-GAKGSGDIHISpDGKFLYASNRLkADGLAIFSIHPEngmltkv 321
Cdd:cd20718 267 WDLDTWK-PVKYIPTpgpgrfvrthpsspyVWADTVfGPENADEIYVI-DKETLKVVKTL-IPKPGKRALHPE------- 336
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 29341718 322 gyqltgihprnfiITPNGKYLLVACRDSNVIQVYerDTDTGlltDIRKDIKVDKP 376
Cdd:cd20718 337 -------------FTRDGKYVYVSVWDGGEVVVY--DAETL---ELVKRIPAETP 373
|
|
| PQQ_ABC_repeats |
TIGR03866 |
PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family ... |
247-361 |
5.96e-04 |
|
PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Pssm-ID: 274824 [Multi-domain] Cd Length: 310 Bit Score: 41.56 E-value: 5.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 247 AYLINELSGTVIAFeynDGE-LKEIQTIAadtVGAKGSGdIHISPDGKFLY--ASnrlkaDGLAIFSIHPENGMLTKvgy 323
Cdd:TIGR03866 13 AYVSNEKDNTISVI---DTAtLKVTRTFP---VGQRPRG-ITFSKDGKLLYvcAS-----DSDTIQVIDPATGEVLH--- 77
|
90 100 110
....*....|....*....|....*....|....*....
gi 29341718 324 QL-TGIHPRNFIITPNGKYLLVACRDSNVIQVYerDTDT 361
Cdd:TIGR03866 78 TLpSGPDPEQFALHPNGKILYIANEDDALVTVI--DIET 114
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| Lactonase |
pfam10282 |
Lactonase, 7-bladed beta-propeller; This entry contains bacterial 6-phosphogluconolactonases ... |
37-377 |
1.59e-148 |
|
Lactonase, 7-bladed beta-propeller; This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold.
Pssm-ID: 431196 [Multi-domain] Cd Length: 340 Bit Score: 423.56 E-value: 1.59e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 37 TMIVGTYTSGDSKGLYSFRFNEENGTATALSE-AEVENPSYLVPSADGKFIYAVSEFsNEQAAANAFAFNKEEGTFRLLN 115
Cdd:pfam10282 1 TLYVGTYTKGDSKGIYVLTLDTETGALTLLGLvAEVGNPSYLALSPDGRTLYAVNEE-GDQGGVAAFRIDPDSGALTLLN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 116 TQKTGGEDPCYIIT--NGSNVVTANYSGGSISVFPIDKDGSLLPASEVVKFKGSGADKERQEKPHLHCVRITPDGKYLFA 193
Cdd:pfam10282 80 QVPTGGASPCHLSVdpDGRFLFVANYHGGSVSVFPLDADGSLGELSQVVQHEGSGPPPERQESPHPHSVDLTPDGKFLVV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 194 DDLGTDQIHKFivnpnaKADNEDVFLKEgsPASYKVEAGSGPRHLTFAPNGSYAYLINELSGTVIAFEYN--DGELKEIQ 271
Cdd:pfam10282 160 PDLGTDRVRVY------KLDAGGGKLTP--PASVQTPPGSGPRHLAFHPNGKYAYVVNELSSTVTVFEYDpaTGTFEELQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 272 ---TIAADTVGAKGSGDIHISPDGKFLYASNRLkADGLAIFSIHPENGMLTKVGYQLT-GIHPRNFIITPNGKYLLVACR 347
Cdd:pfam10282 232 tvsTLPEGFTGTNGAAAIRVSPDGKFLYVSNRG-HDSIAVFAVDEAGGTLTLVERVSTeGDFPRDFNIDPDGKFLVVANQ 310
|
330 340 350
....*....|....*....|....*....|
gi 29341718 348 DSNVIQVYERDTDTGLLTDIRKDIKVDKPV 377
Cdd:pfam10282 311 DSDNVTVFRRDPETGKLTLLGKDIEVPEPV 340
|
|
| Pgl |
COG2706 |
6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism]; |
35-382 |
9.99e-145 |
|
6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism];
Pssm-ID: 442025 [Multi-domain] Cd Length: 352 Bit Score: 414.30 E-value: 9.99e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 35 DLTMIVGTYTSGDSKGLYSFRFNEENGTATALSE-AEVENPSYLVPSADGKFIYAVSE--------FSNEqaaanafafn 105
Cdd:COG2706 7 STFVYVGTYTSGESEGIYVFRLDTATGELTLLGLvAALGNPSFLALSPDGRFLYAVNEvddggvsaFRID---------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 106 KEEGTFRLLNTQKTGGEDPCYIIT--NGSNVVTANYSGGSISVFPIDKDGSLLPASEVVKFKGSGADKERQEKPHLHCVR 183
Cdd:COG2706 77 PADGTLTLLNTVSSGGASPCHLSVdpDGRFLFVANYGGGSVSVFPIDADGSLGEPVQVIQHEGSGPNPERQEGPHAHSVV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 184 ITPDGKYLFADDLGTDQIHKFIVNPNAKAdnedvfLKEgsPASYKVEAGSGPRHLTFAPNGSYAYLINELSGTVIAFEYN 263
Cdd:COG2706 157 FDPDGRFLYVPDLGTDRIYVYRLDPATGK------LPE--PPEVSLPPGSGPRHLAFHPNGRFAYVINELDSTVSVYAYD 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 264 --DGELKEIQTIAA---DTVGAKGSGDIHISPDGKFLYASNRLkADGLAIFSIHPENGMLTKVGYQLT-GIHPRNFIITP 337
Cdd:COG2706 229 aaTGTLTLIQTVSTlpeDFTGENWAADIHISPDGRFLYVSNRG-HNSIAVFAIDADGGKLTLVGHVPTgGKWPRDFAIDP 307
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 29341718 338 NGKYLLVACRDSNVIQVYERDTDTGLLTDIRKDIKVDKPVCIKFV 382
Cdd:COG2706 308 DGRFLLVANQKSDNITVFRIDADTGKLTPTGRSVPVPSPVCVAFL 352
|
|
| PRK11028 |
PRK11028 |
6-phosphogluconolactonase; Provisional |
124-367 |
1.10e-52 |
|
6-phosphogluconolactonase; Provisional
Pssm-ID: 182912 [Multi-domain] Cd Length: 330 Bit Score: 177.84 E-value: 1.10e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 124 PCYIITN--GSNVVTANYSGGSISVFPIDKDGSLLPASEVVKfkgsgadkerqEKPHLHCVRITPDGKYLFADDLGTDQI 201
Cdd:PRK11028 82 PTHISTDhqGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-----------GLEGCHSANIDPDNRTLWVPCLKEDRI 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 202 HKFIVNpnakadnEDVFLKEGSPASYKVEAGSGPRHLTFAPNGSYAYLINELSGTVIAFEYND--GELKEIQTI---AAD 276
Cdd:PRK11028 151 RLFTLS-------DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDphGEIECVQTLdmmPAD 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 277 TVGAKGSGDIHISPDGKFLYASNRLkADGLAIFSIHPENGMLTKVGYQLTGIHPRNFIITPNGKYLLVACRDSNVIQVYE 356
Cdd:PRK11028 224 FSDTRWAADIHITPDGRHLYACDRT-ASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302
|
250
....*....|.
gi 29341718 357 RDTDTGLLTDI 367
Cdd:PRK11028 303 IDGETGLLTEL 313
|
|
| YncE |
COG3391 |
DNA-binding beta-propeller fold protein YncE [General function prediction only]; |
186-362 |
1.20e-14 |
|
DNA-binding beta-propeller fold protein YncE [General function prediction only];
Pssm-ID: 442618 [Multi-domain] Cd Length: 237 Bit Score: 72.80 E-value: 1.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 186 PDGKYLFADDLGTDQIHKFIVNPNAKADnedvflkegspasyKVEAGSGPRHLTFAPNGSYAYLINELSGTVIAFEYNDG 265
Cdd:COG3391 77 ADGRRLYVANSGSGRVSVIDLATGKVVA--------------TIPVGGGPRGLAVDPDGGRLYVADSGNGRVSVIDTATG 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 266 ELkeIQTIAadtVGaKGSGDIHISPDGKFLYASNRLKADGLAIFS-IHPENGmltKVGYQL-TGIHPRNFIITPNGKYLL 343
Cdd:COG3391 143 KV--VATIP---VG-AGPHGIAVDPDGKRLYVANSGSNTVSVIVSvIDTATG---KVVATIpVGGGPVGVAVSPDGRRLY 213
|
170 180
....*....|....*....|....*.
gi 29341718 344 VACRDSN-------VIQVYerDTDTG 362
Cdd:COG3391 214 VANRGSNtsnggsnTVSVI--DLATL 237
|
|
| Vgb |
COG4257 |
Streptogramin lyase [Defense mechanisms]; |
119-367 |
3.43e-07 |
|
Streptogramin lyase [Defense mechanisms];
Pssm-ID: 443399 [Multi-domain] Cd Length: 270 Bit Score: 51.17 E-value: 3.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 119 TGGEDPCYIITNGS-NVVTANYSGGSISVFPIdKDGSLlpaSEVVKFKGSGAdkerqekphlHCVRITPDGKYLFADdLG 197
Cdd:COG4257 14 APGSGPRDVAVDPDgAVWFTDQGGGRIGRLDP-ATGEF---TEYPLGGGSGP----------HGIAVDPDGNLWFTD-NG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 198 TDQIHKFivNPnakadnedvflKEGSPASYKVEAG-SGPRHLTFAPNGSYaYLINELSGTVIAFEYNDGELKEIqtiaad 276
Cdd:COG4257 79 NNRIGRI--DP-----------KTGEITTFALPGGgSNPHGIAFDPDGNL-WFTDQGGNRIGRLDPATGEVTEF------ 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 277 TVGAKGSG--DIHISPDGKFLYASNRlkADGLAIFSihPENGMLTKVGYQLTGIHPRNFIITPNGKyLLVACRDSNVIQV 354
Cdd:COG4257 139 PLPTGGAGpyGIAVDPDGNLWVTDFG--ANAIGRID--PDTGTLTEYALPTPGAGPRGLAVDPDGN-LWVADTGSGRIGR 213
|
250
....*....|...
gi 29341718 355 YerDTDTGLLTDI 367
Cdd:COG4257 214 F--DPKTGTVTEY 224
|
|
| Vgb |
COG4257 |
Streptogramin lyase [Defense mechanisms]; |
184-379 |
4.64e-07 |
|
Streptogramin lyase [Defense mechanisms];
Pssm-ID: 443399 [Multi-domain] Cd Length: 270 Bit Score: 50.79 E-value: 4.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 184 ITPDGKYLFADDlGTDQIHKFivNPnakadnedvflKEGSPASYKVEAGSGPRHLTFAPNGSyAYLINELSGTVIAFEYN 263
Cdd:COG4257 24 VDPDGAVWFTDQ-GGGRIGRL--DP-----------ATGEFTEYPLGGGSGPHGIAVDPDGN-LWFTDNGNNRIGRIDPK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 264 DGELKEIQTiaadTVGAKGSGDIHISPDGKfLYASNrlkADGLAIFSIHPENGMLTKVGYQLTGIHPRNFIITPNGKyLL 343
Cdd:COG4257 89 TGEITTFAL----PGGGSNPHGIAFDPDGN-LWFTD---QGGNRIGRLDPATGEVTEFPLPTGGAGPYGIAVDPDGN-LW 159
|
170 180 190
....*....|....*....|....*....|....*.
gi 29341718 344 VACRDSNVIQVYerDTDTGLLTDIRKDIKVDKPVCI 379
Cdd:COG4257 160 VTDFGANAIGRI--DPDTGTLTEYALPTPGAGPRGL 193
|
|
| YncE |
COG3391 |
DNA-binding beta-propeller fold protein YncE [General function prediction only]; |
40-272 |
1.82e-06 |
|
DNA-binding beta-propeller fold protein YncE [General function prediction only];
Pssm-ID: 442618 [Multi-domain] Cd Length: 237 Bit Score: 48.54 E-value: 1.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 40 VGTYTSGDSKGLYSFRFNEENGTATALSEAEVENPSYLVPSADGKFIYAVSEFSNeQAAANAFAFNKEEGTFRLlntqkt 119
Cdd:COG3391 36 LLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGRRLYVANSGSG-RVSVIDLATGKVVATIPV------ 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 120 gGEDPCYII--TNGSNVVTANYSGGSISVfpIDkdgslLPASEVVKFKGSGAdkerqeKPHlhCVRITPDGKYLFADDLG 197
Cdd:COG3391 109 -GGGPRGLAvdPDGGRLYVADSGNGRVSV--ID-----TATGKVVATIPVGA------GPH--GIAVDPDGKRLYVANSG 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 29341718 198 TDQIHKFIVnpnakadnedVF-LKEGSPASyKVEAGSGPRHLTFAPNGSYAYLINELSGTViafEYNDGELKEIQT 272
Cdd:COG3391 173 SNTVSVIVS----------VIdTATGKVVA-TIPVGGGPVGVAVSPDGRRLYVANRGSNTS---NGGSNTVSVIDL 234
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
220-368 |
5.33e-06 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 46.20 E-value: 5.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 220 KEGSPASYKVEAGSG-PRHLT----------FAPNGSYaylinelsgtvIAFEYNDGELKEIQTIAAD-------TVGAK 281
Cdd:COG0823 7 RDGNSDIYVVDLDGGePRRLTnspgidtspaWSPDGRR-----------IAFTSDRGGGPQIYVVDADggeprrlTFGGG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 282 GSGDIHISPDGKFLYASNRlKADGLAIFSIHPENGMLTkvgyQLT--GIHPRnfiITPNGKYLLVACRDSNVIQVYERDT 359
Cdd:COG0823 76 YNASPSWSPDGKRLAFVSR-SDGRFDIYVLDLDGGAPR----RLTdgPGSPS---WSPDGRRIVFSSDRGGRPDLYVVDL 147
|
170
....*....|.
gi 29341718 360 DTGL--LTDIR 368
Cdd:COG0823 148 DGRKrrLTPAS 158
|
|
| YncE |
COG3391 |
DNA-binding beta-propeller fold protein YncE [General function prediction only]; |
241-383 |
5.68e-06 |
|
DNA-binding beta-propeller fold protein YncE [General function prediction only];
Pssm-ID: 442618 [Multi-domain] Cd Length: 237 Bit Score: 47.00 E-value: 5.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 241 APNGSYAYLINELSGTVIAFEYNDGELKEIQTIAADTVGAKGSGDIHISPDGKFLYASNRlkaDGLAIFSIHPENGmlTK 320
Cdd:COG3391 28 LGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGRRLYVANS---GSGRVSVIDLATG--KV 102
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 29341718 321 VGYQLTGIHPRNFIITPNGKYLLVACRDSNVIQVYerDTDTGlltDIRKDIKV-DKPVCIKFVP 383
Cdd:COG3391 103 VATIPVGGGPRGLAVDPDGGRLYVADSGNGRVSVI--DTATG---KVVATIPVgAGPHGIAVDP 161
|
|
| 8prop_heme_binding_protein |
cd20718 |
eight-bladed beta-propeller heme-binding domain in cytochrome cd1 and similar proteins; ... |
110-376 |
4.93e-04 |
|
eight-bladed beta-propeller heme-binding domain in cytochrome cd1 and similar proteins; Members here contain an 8-bladed beta-propeller heme-binding domain in cytochrome cd1 (nitrite reductase) and similar proteins including NirN and NirF. During denitrification, nitrate (Nar), nitrite (Nir), nitric oxide (Nor), and nitrous oxide (Nos) reductases catalyze the reaction cascade of NO(3-)-> NO(2-)-> NO -> N2O -> N2. The integral membrane proteins NorC, NorB, and NosR form the core assembly platform that binds the nitrate reductase NarGHI and the periplasmic nitrite reductase NirS via its maturation factor NirF. NirN and NirF form a stable complex with the nitrite reductase NirS during enzyme maturation. NirF is involved in heme d1 insertion.
Pssm-ID: 467720 [Multi-domain] Cd Length: 380 Bit Score: 41.94 E-value: 4.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 110 TFRLLNTQKTGGEDPCYIITNGSNVVTANYSGGSIsVFPIDKDGSLLpaseVVKFKGSGADK---ERQEKPHLHCVRITP 186
Cdd:cd20718 131 TLEPLKVIPTTGVNDDGIIESRVGAILETPPGPYF-LVALKDAGSVW----VIDYSDPDGNKvtdIGNIGRPLHDAFLDP 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 187 DGKYlfaddlgtdqihkFIVNPNAkadnEDVF----LKEGSPASyKVEAGSGPrHL---TFAPNGSYAYL--INELSGTV 257
Cdd:cd20718 206 DGRY-------------FIVASQG----SNTMwvldLKTGKVVA-RIPTGKTP-HPgpgATWGRKGVTATphLGEGIVTV 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 258 IAFEYNDgELKEIQT---------------IAADTV-GAKGSGDIHISpDGKFLYASNRLkADGLAIFSIHPEngmltkv 321
Cdd:cd20718 267 WDLDTWK-PVKYIPTpgpgrfvrthpsspyVWADTVfGPENADEIYVI-DKETLKVVKTL-IPKPGKRALHPE------- 336
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 29341718 322 gyqltgihprnfiITPNGKYLLVACRDSNVIQVYerDTDTGlltDIRKDIKVDKP 376
Cdd:cd20718 337 -------------FTRDGKYVYVSVWDGGEVVVY--DAETL---ELVKRIPAETP 373
|
|
| PQQ_ABC_repeats |
TIGR03866 |
PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family ... |
247-361 |
5.96e-04 |
|
PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Pssm-ID: 274824 [Multi-domain] Cd Length: 310 Bit Score: 41.56 E-value: 5.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 247 AYLINELSGTVIAFeynDGE-LKEIQTIAadtVGAKGSGdIHISPDGKFLY--ASnrlkaDGLAIFSIHPENGMLTKvgy 323
Cdd:TIGR03866 13 AYVSNEKDNTISVI---DTAtLKVTRTFP---VGQRPRG-ITFSKDGKLLYvcAS-----DSDTIQVIDPATGEVLH--- 77
|
90 100 110
....*....|....*....|....*....|....*....
gi 29341718 324 QL-TGIHPRNFIITPNGKYLLVACRDSNVIQVYerDTDT 361
Cdd:TIGR03866 78 TLpSGPDPEQFALHPNGKILYIANEDDALVTVI--DIET 114
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
258-366 |
8.02e-04 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 39.66 E-value: 8.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 258 IAFEYNDGELKEIQTIAAD-------TVGAKGSGDIHISPDGKFL-YASNRlkADGLAIFSIHPENGMLTkvgyQLTGIH 329
Cdd:COG0823 1 LAFTLSRDGNSDIYVVDLDggeprrlTNSPGIDTSPAWSPDGRRIaFTSDR--GGGPQIYVVDADGGEPR----RLTFGG 74
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 29341718 330 PRNF--IITPNGKYLLVACRDSNVIQVYERDTDTG---LLTD 366
Cdd:COG0823 75 GYNAspSWSPDGKRLAFVSRSDGRFDIYVLDLDGGaprRLTD 116
|
|
| YliI |
COG2133 |
Glucose/arabinose dehydrogenase, beta-propeller fold [Carbohydrate transport and metabolism]; |
223-300 |
8.38e-04 |
|
Glucose/arabinose dehydrogenase, beta-propeller fold [Carbohydrate transport and metabolism];
Pssm-ID: 441736 [Multi-domain] Cd Length: 365 Bit Score: 41.07 E-value: 8.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 223 SPASYKVE---AG-SGPRHLTFAPNGSyaYLINELSGTVIAFEYNDGELKEIQTIAADTVGAKGSGDIHISPDgkflYAS 298
Cdd:COG2133 23 LPPGFTVEvvaDGlDHPWGLAFLPDGR--LLVTERAGRIRLLDDDGKLSTPVADLPVFAGGEGGLLGVALDPD----FAT 96
|
..
gi 29341718 299 NR 300
Cdd:COG2133 97 NG 98
|
|
| YvrE |
COG3386 |
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ... |
181-363 |
9.82e-04 |
|
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway
Pssm-ID: 442613 [Multi-domain] Cd Length: 266 Bit Score: 40.65 E-value: 9.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 181 CVRITPDGkYLFADDLGTDQIHKFivnpNAKADNEDVFLK-EGSPASykveagsgprhLTFAPNGSYayLINELSGTVIA 259
Cdd:COG3386 12 GPVWDPDG-RLYWVDIPGGRIHRY----DPDGGAVEVFAEpSGRPNG-----------LAFDPDGRL--LVADHGRGLVR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 260 FEYNDGELKEIqtiaADTVGAKGSG--DIHISPDGKFlYASN-RLKADGLAIFSIHPeNGMLTKVGYQLT---GIhprnf 333
Cdd:COG3386 74 FDPADGEVTVL----ADEYGKPLNRpnDGVVDPDGRL-YFTDmGEYLPTGALYRVDP-DGSLRVLADGLTfpnGI----- 142
|
170 180 190
....*....|....*....|....*....|
gi 29341718 334 IITPNGKYLLVACRDSNVIQVYERDTDTGL 363
Cdd:COG3386 143 AFSPDGRTLYVADTGAGRIYRFDLDADGTL 172
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
236-361 |
4.27e-03 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 39.25 E-value: 4.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 236 RHLTFAPNGSYAYLINELSGtviafEYN------DGElKEIQTIAADTVGAKGSgdIHISPDGKFL-YASNRLKadgLAI 308
Cdd:COG4946 346 RLPAWSPDGKSIAYFSDASG-----EYElyiapaDGS-GEPKQLTLGDLGRVFN--PVWSPDGKKIaFTDNRGR---LWV 414
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 29341718 309 FSIhpENGMLTKVGYQLTGIHPRNFIITPNGKYLLVACRDSN---VIQVYERDTDT 361
Cdd:COG4946 415 VDL--ASGKVRKVDTDGYGDGISDLAWSPDSKWLAYSKPGPNqlsQIFLYDVETGK 468
|
|
| Vgb |
COG4257 |
Streptogramin lyase [Defense mechanisms]; |
226-365 |
6.22e-03 |
|
Streptogramin lyase [Defense mechanisms];
Pssm-ID: 443399 [Multi-domain] Cd Length: 270 Bit Score: 38.08 E-value: 6.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29341718 226 SYKV-EAGSGPRHLTFAPNGSyAYLINELSGTVIAFEYNDGELKEIQTiaadtvgAKGSG--DIHISPDGKFLYASNRLK 302
Cdd:COG4257 9 EYPVpAPGSGPRDVAVDPDGA-VWFTDQGGGRIGRLDPATGEFTEYPL-------GGGSGphGIAVDPDGNLWFTDNGNN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 29341718 303 adglAIFSIHPENGMLTKVGYQLTGIHPRNFIITPNGKyLLVACRDSNVIQVYerDTDTGLLT 365
Cdd:COG4257 81 ----RIGRIDPKTGEITTFALPGGGSNPHGIAFDPDGN-LWFTDQGGNRIGRL--DPATGEVT 136
|
|
|