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Conserved domains on  [gi|21425894|gb|AAM52295|]
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maturase K, partial (chloroplast) [Jacobaea adonidifolia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
matK super family cl42950
maturase K
 1-112 4.48e-66

maturase K


The actual alignment was detected with superfamily member CHL00002:

Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 207.06  E-value: 4.48e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21425894    1 ADFSDSDIIERFGRIYRNLSHYHSGSSKKKSLYRVKYILRLSCARTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVFSL 80
Cdd:CHL00002 393 TDLSDSDIIDRFGRICRNLSHYYSGSSKKKSLYRIKYILRLSCAKTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVLSL 472

                         90       100       110
                 ....*....|....*....|....*....|..
gi 21425894   81 TFPRVSSISRRLSRGRIWYLDIICINDLANHE 112
Cdd:CHL00002 473 IFPRTSSTSRRLYRERIWYLDIICINDLVNHE 504
 
Name Accession Description Interval E-value
matK CHL00002
maturase K
 1-112 4.48e-66

maturase K


Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 207.06  E-value: 4.48e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21425894    1 ADFSDSDIIERFGRIYRNLSHYHSGSSKKKSLYRVKYILRLSCARTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVFSL 80
Cdd:CHL00002 393 TDLSDSDIIDRFGRICRNLSHYYSGSSKKKSLYRIKYILRLSCAKTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVLSL 472

                         90       100       110
                 ....*....|....*....|....*....|..
gi 21425894   81 TFPRVSSISRRLSRGRIWYLDIICINDLANHE 112
Cdd:CHL00002 473 IFPRTSSTSRRLYRERIWYLDIICINDLVNHE 504
Intron_maturas2 pfam01348
Type II intron maturase; Group II introns use intron-encoded reverse transcriptase, maturase ...
 2-63 3.90e-20

Type II intron maturase; Group II introns use intron-encoded reverse transcriptase, maturase and DNA endonuclease activities for site-specific insertion into DNA. Although this type of intron is self splicing in vitro they require a maturase protein for splicing in vivo. It has been shown that a specific region of the aI2 intron is needed for the maturase function. This region was found to be conserved in group II introns and called domain X.


Pssm-ID: 279664 [Multi-domain]  Cd Length: 140  Bit Score: 79.05  E-value: 3.90e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 21425894     2 DFSDSDIIERFGRIYRNLSHYHSGSSKKKSLY-RVKYILRLSCARTLARKHKS-TVRAFLKRLG 63
Cdd:pfam01348  40 DLDDRDILLRYNAIIRGILNYYSFADNKKRLYtRIYYILRLSCAKTLARKLKLgTVRKVIKKFG 103
 
Name Accession Description Interval E-value
matK CHL00002
maturase K
 1-112 4.48e-66

maturase K


Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 207.06  E-value: 4.48e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21425894    1 ADFSDSDIIERFGRIYRNLSHYHSGSSKKKSLYRVKYILRLSCARTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVFSL 80
Cdd:CHL00002 393 TDLSDSDIIDRFGRICRNLSHYYSGSSKKKSLYRIKYILRLSCAKTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVLSL 472

                         90       100       110
                 ....*....|....*....|....*....|..
gi 21425894   81 TFPRVSSISRRLSRGRIWYLDIICINDLANHE 112
Cdd:CHL00002 473 IFPRTSSTSRRLYRERIWYLDIICINDLVNHE 504
Intron_maturas2 pfam01348
Type II intron maturase; Group II introns use intron-encoded reverse transcriptase, maturase ...
 2-63 3.90e-20

Type II intron maturase; Group II introns use intron-encoded reverse transcriptase, maturase and DNA endonuclease activities for site-specific insertion into DNA. Although this type of intron is self splicing in vitro they require a maturase protein for splicing in vivo. It has been shown that a specific region of the aI2 intron is needed for the maturase function. This region was found to be conserved in group II introns and called domain X.


Pssm-ID: 279664 [Multi-domain]  Cd Length: 140  Bit Score: 79.05  E-value: 3.90e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 21425894     2 DFSDSDIIERFGRIYRNLSHYHSGSSKKKSLY-RVKYILRLSCARTLARKHKS-TVRAFLKRLG 63
Cdd:pfam01348  40 DLDDRDILLRYNAIIRGILNYYSFADNKKRLYtRIYYILRLSCAKTLARKLKLgTVRKVIKKFG 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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