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Conserved domains on  [gi|16755332|gb|AAL27901|]
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maturase K, partial (chloroplast) [Callistachys lanceolata]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
matK super family cl42950
maturase K
 1-47 3.02e-23

maturase K


The actual alignment was detected with superfamily member CHL00002:

Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 89.19  E-value: 3.02e-23
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 16755332    1 MEEYPVYLEFDRSRQQDFLYPLIFREYIYGIAYGHDLNRSIFVKNVG 47
Cdd:CHL00002   1 MEEFQGYLELDRSRQQDFLYPLLFQEYIYALAHDHGLNRSILLENSG 47
 
Name Accession Description Interval E-value
matK CHL00002
maturase K
 1-47 3.02e-23

maturase K


Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 89.19  E-value: 3.02e-23
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 16755332    1 MEEYPVYLEFDRSRQQDFLYPLIFREYIYGIAYGHDLNRSIFVKNVG 47
Cdd:CHL00002   1 MEEFQGYLELDRSRQQDFLYPLLFQEYIYALAHDHGLNRSILLENSG 47
MatK_N pfam01824
MatK/TrnK amino terminal region; The function of this region is unknown.
 1-47 1.95e-17

MatK/TrnK amino terminal region; The function of this region is unknown.


Pssm-ID: 280070  Cd Length: 331  Bit Score: 72.49  E-value: 1.95e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 16755332     1 MEEYPVYLEFDRSRQQDFLYPLIFREYIYGIAYGHDLNRSIFVKNVG 47
Cdd:pfam01824   1 MEEFQRYLELDRSRQQRFLYPLLFQEYIYALAHDHNLNRSILLENVG 47
 
Name Accession Description Interval E-value
matK CHL00002
maturase K
 1-47 3.02e-23

maturase K


Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 89.19  E-value: 3.02e-23
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 16755332    1 MEEYPVYLEFDRSRQQDFLYPLIFREYIYGIAYGHDLNRSIFVKNVG 47
Cdd:CHL00002   1 MEEFQGYLELDRSRQQDFLYPLLFQEYIYALAHDHGLNRSILLENSG 47
MatK_N pfam01824
MatK/TrnK amino terminal region; The function of this region is unknown.
 1-47 1.95e-17

MatK/TrnK amino terminal region; The function of this region is unknown.


Pssm-ID: 280070  Cd Length: 331  Bit Score: 72.49  E-value: 1.95e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 16755332     1 MEEYPVYLEFDRSRQQDFLYPLIFREYIYGIAYGHDLNRSIFVKNVG 47
Cdd:pfam01824   1 MEEFQRYLELDRSRQQRFLYPLLFQEYIYALAHDHNLNRSILLENVG 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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