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Conserved domains on  [gi|14971023|gb|AAK74076|]
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RNA polymerase beta subunit, partial [Bacillus anthracis]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RpoB super family cl33762
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ...
1-157 4.70e-79

DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase


The actual alignment was detected with superfamily member COG0085:

Pssm-ID: 439855 [Multi-domain]  Cd Length: 1001  Bit Score: 256.57  E-value: 4.70e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023    1 VRSPSVYYSGKVDKNGKRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDN---E 77
Cdd:COG0085  126 VRSPGVYFVEEEDKSGKDLYSAKVIPSRGAWLEFETDKDGTIYVRIDRKRKIPVTVLLRALGLETDEEILEAFGDDpiqE 205
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023   78 YLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRYKINKKLHIKNRLFNQRL-AETL 156
Cdd:COG0085  206 YILATLEKDNTKTQEEALLEIYRKLRPGEPPTIERAEQLLDNLFFDPKRYDLAHVGRYKINKKLGLDVPPEDRVLtAEDI 285

                 .
gi 14971023  157 V 157
Cdd:COG0085  286 V 286
PRK00566 super family cl35110
DNA-directed RNA polymerase subunit beta'; Provisional
143-180 1.93e-03

DNA-directed RNA polymerase subunit beta'; Provisional


The actual alignment was detected with superfamily member PRK00566:

Pssm-ID: 234794 [Multi-domain]  Cd Length: 1156  Bit Score: 39.28  E-value: 1.93e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 14971023   143 IKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRI 180
Cdd:PRK00566  802 LEERILGRVLAEDVVDPETGEVIVPAGTLIDEEIADKI 839
 
Name Accession Description Interval E-value
RpoB COG0085
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ...
1-157 4.70e-79

DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 439855 [Multi-domain]  Cd Length: 1001  Bit Score: 256.57  E-value: 4.70e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023    1 VRSPSVYYSGKVDKNGKRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDN---E 77
Cdd:COG0085  126 VRSPGVYFVEEEDKSGKDLYSAKVIPSRGAWLEFETDKDGTIYVRIDRKRKIPVTVLLRALGLETDEEILEAFGDDpiqE 205
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023   78 YLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRYKINKKLHIKNRLFNQRL-AETL 156
Cdd:COG0085  206 YILATLEKDNTKTQEEALLEIYRKLRPGEPPTIERAEQLLDNLFFDPKRYDLAHVGRYKINKKLGLDVPPEDRVLtAEDI 285

                 .
gi 14971023  157 V 157
Cdd:COG0085  286 V 286
rpoB TIGR02013
DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit ...
1-148 3.56e-74

DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit of Bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit. [Transcription, DNA-dependent RNA polymerase]


Pssm-ID: 273928 [Multi-domain]  Cd Length: 1065  Bit Score: 244.19  E-value: 3.56e-74
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023      1 VRSPSVYYSGKVD--KNGKRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEY 78
Cdd:TIGR02013  143 HRSPGVFFSSEKDttKSGKVLFSARIIPYRGSWLEFETDKKDVLYVRIDRKRKLPATVLLRALGYTIDTLILNRLGSGEY 222
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023     79 LSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRYKINKKLHIKNRLF 148
Cdd:TIGR02013  223 IRNTLRKDPTNSEEEALVEIYRKLRPGEPPTVEAARSLLENLFFDPKRYDLGRVGRYKLNKKLGLDVPES 292
rpoB PRK00405
DNA-directed RNA polymerase subunit beta; Reviewed
1-143 3.57e-74

DNA-directed RNA polymerase subunit beta; Reviewed


Pssm-ID: 234749 [Multi-domain]  Cd Length: 1112  Bit Score: 244.24  E-value: 3.57e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023     1 VRSPSVYYSGKVDK--NGKRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFgSDQEITELLGD--- 75
Cdd:PRK00405  144 HRSPGVYFDHDKDKtsSGKLLYSARIIPYRGSWLEFEFDPKDILYVRIDRRRKLPVTVLLRALGY-SDEEILDLFYEkee 222
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023    76 ------------------------------------------NEYLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENA 113
Cdd:PRK00405  223 fgkeievpveyllgkvlaedivdeetgevlaeandeiteeldGPYIRNTLEKDPTSSREEALVEIYRRLRPGEPPTVEAA 302
                         170       180       190
                  ....*....|....*....|....*....|
gi 14971023   114 KSLLVSRFFDPKRYDLANVGRYKINKKLHI 143
Cdd:PRK00405  303 RSLLENLFFDPKRYDLSKVGRYKLNKKLGL 332
RNA_pol_Rpb2_2 pfam04561
RNA polymerase Rpb2, domain 2; RNA polymerases catalyze the DNA dependent polymerization of ...
2-152 2.64e-22

RNA polymerase Rpb2, domain 2; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the lobe domain. DNA has been demonstrated to bind to the concave surface of the lobe domain, and plays a role in maintaining the transcription bubble. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 1 (DRI).


Pssm-ID: 398318 [Multi-domain]  Cd Length: 185  Bit Score: 90.48  E-value: 2.64e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023     2 RSPSVYYSGKVDKNGKRGF-TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGD----- 75
Cdd:pfam04561   1 RSNGIYVEKELDKNGIIATyTSSLISNRGSWLKLEIDGKTLIWSRPSKKRKIPIVIFLKALGLVSDREILDRLCYdfndp 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023    76 ---NEYLSNTLEKDNTDSTEKALLEIYE--RLRPGEPPTVENAKSLLVSRFfdpkrydlanvGRYKINKKLHIKNRLFNQ 150
Cdd:pfam04561  81 qmlELLKPELEEAENIYTQEEALDYIGKgfALRRGEEPRLQRAREILYSRD-----------PKYNLNKHLGLNEPFENE 149

                  ..
gi 14971023   151 RL 152
Cdd:pfam04561 150 RL 151
PRK00566 PRK00566
DNA-directed RNA polymerase subunit beta'; Provisional
143-180 1.93e-03

DNA-directed RNA polymerase subunit beta'; Provisional


Pssm-ID: 234794 [Multi-domain]  Cd Length: 1156  Bit Score: 39.28  E-value: 1.93e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 14971023   143 IKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRI 180
Cdd:PRK00566  802 LEERILGRVLAEDVVDPETGEVIVPAGTLIDEEIADKI 839
 
Name Accession Description Interval E-value
RpoB COG0085
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ...
1-157 4.70e-79

DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 439855 [Multi-domain]  Cd Length: 1001  Bit Score: 256.57  E-value: 4.70e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023    1 VRSPSVYYSGKVDKNGKRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDN---E 77
Cdd:COG0085  126 VRSPGVYFVEEEDKSGKDLYSAKVIPSRGAWLEFETDKDGTIYVRIDRKRKIPVTVLLRALGLETDEEILEAFGDDpiqE 205
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023   78 YLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRYKINKKLHIKNRLFNQRL-AETL 156
Cdd:COG0085  206 YILATLEKDNTKTQEEALLEIYRKLRPGEPPTIERAEQLLDNLFFDPKRYDLAHVGRYKINKKLGLDVPPEDRVLtAEDI 285

                 .
gi 14971023  157 V 157
Cdd:COG0085  286 V 286
rpoB TIGR02013
DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit ...
1-148 3.56e-74

DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit of Bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit. [Transcription, DNA-dependent RNA polymerase]


Pssm-ID: 273928 [Multi-domain]  Cd Length: 1065  Bit Score: 244.19  E-value: 3.56e-74
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023      1 VRSPSVYYSGKVD--KNGKRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEY 78
Cdd:TIGR02013  143 HRSPGVFFSSEKDttKSGKVLFSARIIPYRGSWLEFETDKKDVLYVRIDRKRKLPATVLLRALGYTIDTLILNRLGSGEY 222
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023     79 LSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRYKINKKLHIKNRLF 148
Cdd:TIGR02013  223 IRNTLRKDPTNSEEEALVEIYRKLRPGEPPTVEAARSLLENLFFDPKRYDLGRVGRYKLNKKLGLDVPES 292
rpoB PRK00405
DNA-directed RNA polymerase subunit beta; Reviewed
1-143 3.57e-74

DNA-directed RNA polymerase subunit beta; Reviewed


Pssm-ID: 234749 [Multi-domain]  Cd Length: 1112  Bit Score: 244.24  E-value: 3.57e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023     1 VRSPSVYYSGKVDK--NGKRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFgSDQEITELLGD--- 75
Cdd:PRK00405  144 HRSPGVYFDHDKDKtsSGKLLYSARIIPYRGSWLEFEFDPKDILYVRIDRRRKLPVTVLLRALGY-SDEEILDLFYEkee 222
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023    76 ------------------------------------------NEYLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENA 113
Cdd:PRK00405  223 fgkeievpveyllgkvlaedivdeetgevlaeandeiteeldGPYIRNTLEKDPTSSREEALVEIYRRLRPGEPPTVEAA 302
                         170       180       190
                  ....*....|....*....|....*....|
gi 14971023   114 KSLLVSRFFDPKRYDLANVGRYKINKKLHI 143
Cdd:PRK00405  303 RSLLENLFFDPKRYDLSKVGRYKLNKKLGL 332
rpoB CHL00207
RNA polymerase beta subunit; Provisional
1-144 1.15e-35

RNA polymerase beta subunit; Provisional


Pssm-ID: 214397 [Multi-domain]  Cd Length: 1077  Bit Score: 134.45  E-value: 1.15e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023     1 VRSPSVYYSGKVDKNGKRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFgSDQEITELLGDN---E 77
Cdd:CHL00207  122 IRSPGIYFKKEIKKNSNKIYSATLIPNRGSWIKFELDKNKEIWIRIDKNRKKPLIIFLKALGL-TDQDIYSRLTKSeflK 200
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 14971023    78 YLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRYKINKKLHIK 144
Cdd:CHL00207  201 KLKPILLNSNSYTNEEILLEIYKNLSPIEPATVNDANQNLFSRFFDPKNYDLGKVGRYKINNKLNLN 267
rpoB CHL00001
RNA polymerase beta subunit
1-148 8.31e-34

RNA polymerase beta subunit


Pssm-ID: 214330 [Multi-domain]  Cd Length: 1070  Bit Score: 129.25  E-value: 8.31e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023     1 VRSPSVYYSGKVDKNGKRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFgSDQEITELLGDNEYLS 80
Cdd:CHL00001  127 LRSPGIYYRSELDHNGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLLSAMGL-NLREILDNVCYPEIFL 205
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 14971023    81 NTL---EKDNTDSTEKALLEIYERL--RPGEPPTVENAKSLLVSRFFDpKRYDLANVGRYKINKKLHI---KNRLF 148
Cdd:CHL00001  206 SFLndkEKKKIGSKENAILEFYQQFacVGGDPVFSESLCKELQKKFFQ-QRCELGRIGRRNMNRKLNLdipENNTF 280
RNA_pol_Rpb2_2 pfam04561
RNA polymerase Rpb2, domain 2; RNA polymerases catalyze the DNA dependent polymerization of ...
2-152 2.64e-22

RNA polymerase Rpb2, domain 2; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the lobe domain. DNA has been demonstrated to bind to the concave surface of the lobe domain, and plays a role in maintaining the transcription bubble. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 1 (DRI).


Pssm-ID: 398318 [Multi-domain]  Cd Length: 185  Bit Score: 90.48  E-value: 2.64e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023     2 RSPSVYYSGKVDKNGKRGF-TATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELLGD----- 75
Cdd:pfam04561   1 RSNGIYVEKELDKNGIIATyTSSLISNRGSWLKLEIDGKTLIWSRPSKKRKIPIVIFLKALGLVSDREILDRLCYdfndp 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023    76 ---NEYLSNTLEKDNTDSTEKALLEIYE--RLRPGEPPTVENAKSLLVSRFfdpkrydlanvGRYKINKKLHIKNRLFNQ 150
Cdd:pfam04561  81 qmlELLKPELEEAENIYTQEEALDYIGKgfALRRGEEPRLQRAREILYSRD-----------PKYNLNKHLGLNEPFENE 149

                  ..
gi 14971023   151 RL 152
Cdd:pfam04561 150 RL 151
PRK14844 PRK14844
DNA-directed RNA polymerase subunit beta/beta';
2-141 3.69e-19

DNA-directed RNA polymerase subunit beta/beta';


Pssm-ID: 173305 [Multi-domain]  Cd Length: 2836  Bit Score: 86.60  E-value: 3.69e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023     2 RSPSVYYS---GKVDKNGKRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALG---------------- 62
Cdd:PRK14844  171 RSPGVFFDsdkGKTYNSGKLIYSARVIPYRGSWLDIEFDVKDHLYFRIDRKRKLPISVLLKALGlsnndildrfyekiky 250
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023    63 ---------------------------------FGSDQEITELLG----DNE---------------------------- 77
Cdd:PRK14844  251 ikhkdgwkvpfvpdkfkgvrlpfdlmdvegnvlLKANVRITSRLAkklyDNElkeylvpfdsicglflaedlidsasstk 330
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023    78 ------------------------------------YLSNTLEKDNTDSTEKALLEIYERLRPGEPPTVENAKSLLVSRF 121
Cdd:PRK14844  331 ilsagesikledikklellsideisvlnidnlsvgpYILNTLFLDENMSYQDALYEIYKVLRPGEVPVLEIVEEFFRNLF 410
                         250       260
                  ....*....|....*....|
gi 14971023   122 FDPKRYDLANVGRYKINKKL 141
Cdd:PRK14844  411 FSPEYYDLSNIGRLKLNSYL 430
PRK09603 PRK09603
DNA-directed RNA polymerase subunit beta/beta';
2-143 8.89e-18

DNA-directed RNA polymerase subunit beta/beta';


Pssm-ID: 181983 [Multi-domain]  Cd Length: 2890  Bit Score: 82.66  E-value: 8.89e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023     2 RSPSVYYSGK--VDKNGKRGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFgSDQEITELL------ 73
Cdd:PRK09603  154 RSPGVIFKEEesSTSLNKLIYTGQIIPDRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDY-QKQDIIKMFyplvkv 232
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023    74 ----------------------------GD---------------------------------NEYLS------------ 80
Cdd:PRK09603  233 ryendkylipfasldanqrmefdlkdpqGKiillagkkltsrkikelkenhlewveypmdillNRHLAepvmvgkevlld 312
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023    81 -------NTLEK-------------------DNT----------------------DSTEKALLEIYERLRPGEPPTVEN 112
Cdd:PRK09603  313 mltqldkNKLEKihdlgvqefviindlalghDASiihsfsadseslkllkqtekidDENALAAIRIHKVMKPGDPVTTEV 392
                         250       260       270
                  ....*....|....*....|....*....|.
gi 14971023   113 AKSLLVSRFFDPKRYDLANVGRYKINKKLHI 143
Cdd:PRK09603  393 AKQFVKKLFFDPERYDLTMVGRMKMNHKLGL 423
RNA_pol_Rpb2_1 pfam04563
RNA polymerase beta subunit; RNA polymerases catalyze the DNA dependent polymerization of RNA. ...
16-148 1.17e-07

RNA polymerase beta subunit; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the protrusion domain. The other lobe (pfam04561) is nested within this domain.


Pssm-ID: 367994 [Multi-domain]  Cd Length: 396  Bit Score: 52.00  E-value: 1.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14971023    16 GKRGFTA--------TVIPNRGAWLE-YETDAKDVVYVRIDRTRK-LPVTVLLRALGFGSDQEITELL----GDNEYLSn 81
Cdd:pfam04563 170 KKRGSVAsvrssaeiSVRPDSTSWVNvLEYLSNGTIYFKFPYIKKeIPIVIILRALGFTSDREIFELIcydvNDQQLQE- 248
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 14971023    82 tlekdntdstekALLEIYERLRPGEPPTVENAKSLLVSRFFDPKRYDLANVGRYKINKKLHIKNRLF 148
Cdd:pfam04563 249 ------------ELLPSLEEGFKIRIQTQEQALDYIGGRGRAIFRMGRPREPRIKYAEEILQKEVLP 303
PRK00566 PRK00566
DNA-directed RNA polymerase subunit beta'; Provisional
143-180 1.93e-03

DNA-directed RNA polymerase subunit beta'; Provisional


Pssm-ID: 234794 [Multi-domain]  Cd Length: 1156  Bit Score: 39.28  E-value: 1.93e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 14971023   143 IKNRLFNQRLAETLVDPETGEILAAEGTILDRRTLDRI 180
Cdd:PRK00566  802 LEERILGRVLAEDVVDPETGEVIVPAGTLIDEEIADKI 839
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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