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Conserved domains on  [gi|28958121|gb|AAH47294|]
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IFT172 protein, partial [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HemYx super family cl43779
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 9-106 3.70e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


The actual alignment was detected with superfamily member COG3071:

Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 42.98  E-value: 3.70e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28958121   9 AEAHDPDSVAEVLVGQARGALEEKDFQKAEGLLLRAQRPG--------LALNYYKEAGLWSDALRI------CKDYVPSQ 74
Cdd:COG3071  76 ALELAPEAELAVLLTRAELLLDQGQAEQALATLEALRAGAprhpqvlrLLLQAYRQLGDWEELLELlpalrkHKALSAEE 155

                        90       100       110
                ....*....|....*....|....*....|..
gi 28958121  75 LEALQEEYEREATKKGARGVEGFveqARHWEQ 106
Cdd:COG3071 156 AQALERRAYLGLLRQAARDAEAL---KALWKA 184
 
Name Accession Description Interval E-value
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 9-106 3.70e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 42.98  E-value: 3.70e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28958121   9 AEAHDPDSVAEVLVGQARGALEEKDFQKAEGLLLRAQRPG--------LALNYYKEAGLWSDALRI------CKDYVPSQ 74
Cdd:COG3071  76 ALELAPEAELAVLLTRAELLLDQGQAEQALATLEALRAGAprhpqvlrLLLQAYRQLGDWEELLELlpalrkHKALSAEE 155

                        90       100       110
                ....*....|....*....|....*....|..
gi 28958121  75 LEALQEEYEREATKKGARGVEGFveqARHWEQ 106
Cdd:COG3071 156 AQALERRAYLGLLRQAARDAEAL---KALWKA 184
 
Name Accession Description Interval E-value
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 9-106 3.70e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 42.98  E-value: 3.70e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28958121   9 AEAHDPDSVAEVLVGQARGALEEKDFQKAEGLLLRAQRPG--------LALNYYKEAGLWSDALRI------CKDYVPSQ 74
Cdd:COG3071  76 ALELAPEAELAVLLTRAELLLDQGQAEQALATLEALRAGAprhpqvlrLLLQAYRQLGDWEELLELlpalrkHKALSAEE 155

                        90       100       110
                ....*....|....*....|....*....|..
gi 28958121  75 LEALQEEYEREATKKGARGVEGFveqARHWEQ 106
Cdd:COG3071 156 AQALERRAYLGLLRQAARDAEAL---KALWKA 184
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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