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Conserved domains on  [gi|22477368|gb|AAH36920|]
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CHD8 protein, partial [Homo sapiens]

Protein Classification

BRK domain-containing protein( domain architecture ID 10540209)

BRK domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BRK pfam07533
BRK domain; The function of this domain is unknown. It is often found associated with ...
 76-119 2.83e-15

BRK domain; The function of this domain is unknown. It is often found associated with helicases and transcription factors.


:

Pssm-ID: 462196  Cd Length: 44  Bit Score: 69.08  E-value: 2.83e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 22477368    76 VDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEFAVDPR 119
Cdd:pfam07533   1 LTGDERVPVVNRKTGKKLTGDKAPKLKDLEEWLEENPGYEVDPR 44
BRK smart00592
domain in transcription and CHROMO domain helicases;
146-186 1.70e-07

domain in transcription and CHROMO domain helicases;


:

Pssm-ID: 197800  Cd Length: 45  Bit Score: 46.96  E-value: 1.70e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 22477368    146 LGMEPVQTANSRNGKKG----HHTETVFNRVLPGPIAPESSKKRA 186
Cdd:smart00592   1 DGEERVPVINRETGKKLtgddAPKAKDLERWLEENPEYEVAPRSA 45
 
Name Accession Description Interval E-value
BRK pfam07533
BRK domain; The function of this domain is unknown. It is often found associated with ...
 76-119 2.83e-15

BRK domain; The function of this domain is unknown. It is often found associated with helicases and transcription factors.


Pssm-ID: 462196  Cd Length: 44  Bit Score: 69.08  E-value: 2.83e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 22477368    76 VDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEFAVDPR 119
Cdd:pfam07533   1 LTGDERVPVVNRKTGKKLTGDKAPKLKDLEEWLEENPGYEVDPR 44
BRK smart00592
domain in transcription and CHROMO domain helicases;
77-121 5.62e-15

domain in transcription and CHROMO domain helicases;


Pssm-ID: 197800  Cd Length: 45  Bit Score: 68.14  E-value: 5.62e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 22477368     77 DLETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEFAVDPRFL 121
Cdd:smart00592   1 DGEERVPVINRETGKKLTGDDAPKAKDLERWLEENPEYEVAPRSA 45
BRK smart00592
domain in transcription and CHROMO domain helicases;
146-186 1.70e-07

domain in transcription and CHROMO domain helicases;


Pssm-ID: 197800  Cd Length: 45  Bit Score: 46.96  E-value: 1.70e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 22477368    146 LGMEPVQTANSRNGKKG----HHTETVFNRVLPGPIAPESSKKRA 186
Cdd:smart00592   1 DGEERVPVINRETGKKLtgddAPKAKDLERWLEENPEYEVAPRSA 45
 
Name Accession Description Interval E-value
BRK pfam07533
BRK domain; The function of this domain is unknown. It is often found associated with ...
 76-119 2.83e-15

BRK domain; The function of this domain is unknown. It is often found associated with helicases and transcription factors.


Pssm-ID: 462196  Cd Length: 44  Bit Score: 69.08  E-value: 2.83e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 22477368    76 VDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEFAVDPR 119
Cdd:pfam07533   1 LTGDERVPVVNRKTGKKLTGDKAPKLKDLEEWLEENPGYEVDPR 44
BRK smart00592
domain in transcription and CHROMO domain helicases;
77-121 5.62e-15

domain in transcription and CHROMO domain helicases;


Pssm-ID: 197800  Cd Length: 45  Bit Score: 68.14  E-value: 5.62e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 22477368     77 DLETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEFAVDPRFL 121
Cdd:smart00592   1 DGEERVPVINRETGKKLTGDDAPKAKDLERWLEENPEYEVAPRSA 45
BRK smart00592
domain in transcription and CHROMO domain helicases;
146-186 1.70e-07

domain in transcription and CHROMO domain helicases;


Pssm-ID: 197800  Cd Length: 45  Bit Score: 46.96  E-value: 1.70e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 22477368    146 LGMEPVQTANSRNGKKG----HHTETVFNRVLPGPIAPESSKKRA 186
Cdd:smart00592   1 DGEERVPVINRETGKKLtgddAPKAKDLERWLEENPEYEVAPRSA 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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