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Conserved domains on  [gi|150416149|sp|A2AJT4|]
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RecName: Full=Arginine/serine-rich protein PNISR; AltName: Full=Serine/arginine-rich-splicing regulatory protein 130; Short=SRrp130; AltName: Full=Splicing factor, arginine/serine-rich 130; AltName: Full=Splicing factor, arginine/serine-rich 18

Protein Classification

PNISR domain-containing protein( domain architecture ID 12175673)

PNISR domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PNISR pfam15996
Arginine/serine-rich protein PNISR;
223-380 9.60e-53

Arginine/serine-rich protein PNISR;


:

Pssm-ID: 464963 [Multi-domain]  Cd Length: 179  Bit Score: 181.08  E-value: 9.60e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150416149  223 QIDAVKRRTLPAWIREGLEKMEREKQKKLEKERMEQQRSQLSKKEKKATE-DAEGGDGPRLPQRSKFDSDEEDEDAENLE 301
Cdd:pfam15996   1 TIDAAKRKTLPAWIREGLEKMEREKQKKLERERMEKERAEMAKEEKKESSkTLEEGDGPRLPSKSKFDSDDEDVDEEESD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150416149  302 AVSSGKV-----TRSPSPAPQEEHSEPEMT-EEEKEYQMMLLTKMLLTEILLDVTDEEIYYVAKDAHRK----ATKAPAK 371
Cdd:pfam15996  81 EDVSSGKseilnSRSPSPAPNEEQSEPERKtEEEKEEDLMLLTRKLLTEILLDVTNEEIYAVAKEVHRKhrakATKAPAK 160


                  ....*....
gi 150416149  372 QLAQSSALA 380
Cdd:pfam15996 161 QLAQSSALA 169
U2AF_lg super family cl36941
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
 643-750 2.48e-05

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


The actual alignment was detected with superfamily member TIGR01642:

Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 47.58  E-value: 2.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150416149  643 EDPRGnlsgnshKHKGEAKEQDRKKERSRSVDKDRRKKDKERDRELDKRKEKQKREEKDFKFSSQDDRLKRKRESERTFC 722
Cdd:TIGR01642  10 EKSRG-------RDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYSSVRRSRDRPRRRS 82

                          90       100
                  ....*....|....*....|....*...
gi 150416149  723 RSGSISVKViRHDSRQDSKKNATKDSKR 750
Cdd:TIGR01642  83 RSVRSIEQH-RRRLRDRSPSNQWRKDDK 109
 
Name Accession Description Interval E-value
PNISR pfam15996
Arginine/serine-rich protein PNISR;
223-380 9.60e-53

Arginine/serine-rich protein PNISR;


Pssm-ID: 464963 [Multi-domain]  Cd Length: 179  Bit Score: 181.08  E-value: 9.60e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150416149  223 QIDAVKRRTLPAWIREGLEKMEREKQKKLEKERMEQQRSQLSKKEKKATE-DAEGGDGPRLPQRSKFDSDEEDEDAENLE 301
Cdd:pfam15996   1 TIDAAKRKTLPAWIREGLEKMEREKQKKLERERMEKERAEMAKEEKKESSkTLEEGDGPRLPSKSKFDSDDEDVDEEESD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150416149  302 AVSSGKV-----TRSPSPAPQEEHSEPEMT-EEEKEYQMMLLTKMLLTEILLDVTDEEIYYVAKDAHRK----ATKAPAK 371
Cdd:pfam15996  81 EDVSSGKseilnSRSPSPAPNEEQSEPERKtEEEKEEDLMLLTRKLLTEILLDVTNEEIYAVAKEVHRKhrakATKAPAK 160


                  ....*....
gi 150416149  372 QLAQSSALA 380
Cdd:pfam15996 161 QLAQSSALA 169
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
 643-750 2.48e-05

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 47.58  E-value: 2.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150416149  643 EDPRGnlsgnshKHKGEAKEQDRKKERSRSVDKDRRKKDKERDRELDKRKEKQKREEKDFKFSSQDDRLKRKRESERTFC 722
Cdd:TIGR01642  10 EKSRG-------RDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYSSVRRSRDRPRRRS 82

                          90       100
                  ....*....|....*....|....*...
gi 150416149  723 RSGSISVKViRHDSRQDSKKNATKDSKR 750
Cdd:TIGR01642  83 RSVRSIEQH-RRRLRDRSPSNQWRKDDK 109
 
Name Accession Description Interval E-value
PNISR pfam15996
Arginine/serine-rich protein PNISR;
223-380 9.60e-53

Arginine/serine-rich protein PNISR;


Pssm-ID: 464963 [Multi-domain]  Cd Length: 179  Bit Score: 181.08  E-value: 9.60e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150416149  223 QIDAVKRRTLPAWIREGLEKMEREKQKKLEKERMEQQRSQLSKKEKKATE-DAEGGDGPRLPQRSKFDSDEEDEDAENLE 301
Cdd:pfam15996   1 TIDAAKRKTLPAWIREGLEKMEREKQKKLERERMEKERAEMAKEEKKESSkTLEEGDGPRLPSKSKFDSDDEDVDEEESD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150416149  302 AVSSGKV-----TRSPSPAPQEEHSEPEMT-EEEKEYQMMLLTKMLLTEILLDVTDEEIYYVAKDAHRK----ATKAPAK 371
Cdd:pfam15996  81 EDVSSGKseilnSRSPSPAPNEEQSEPERKtEEEKEEDLMLLTRKLLTEILLDVTNEEIYAVAKEVHRKhrakATKAPAK 160


                  ....*....
gi 150416149  372 QLAQSSALA 380
Cdd:pfam15996 161 QLAQSSALA 169
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
 643-750 2.48e-05

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 47.58  E-value: 2.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150416149  643 EDPRGnlsgnshKHKGEAKEQDRKKERSRSVDKDRRKKDKERDRELDKRKEKQKREEKDFKFSSQDDRLKRKRESERTFC 722
Cdd:TIGR01642  10 EKSRG-------RDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYSSVRRSRDRPRRRS 82

                          90       100
                  ....*....|....*....|....*...
gi 150416149  723 RSGSISVKViRHDSRQDSKKNATKDSKR 750
Cdd:TIGR01642  83 RSVRSIEQH-RRRLRDRSPSNQWRKDDK 109
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
 661-749 5.41e-03

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 40.26  E-value: 5.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 150416149  661 KEQDRKKERSRSVDKDrRKKDKERDRELDKRKEKQKREEKDFKFSSQDDRLKRKResertfcRSGSISVKVIRHDSRQDS 740
Cdd:TIGR01642   3 EEPDREREKSRGRDRD-RSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRR-------RYDSRSPRSLRYSSVRRS 74


                  ....*....
gi 150416149  741 KKNATKDSK 749
Cdd:TIGR01642  75 RDRPRRRSR 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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