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Conserved domains on  [gi|2522667919|pdb|8P60|RDD]
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Chain RDD, 40S ribosomal protein S29

Protein Classification

uS14 family ribosomal protein( domain architecture ID 2116)

uS14 family ribosomal protein such as bacterial 30S ribosomal protein S14, and eukaryotic 40S ribosomal protein S29

Gene Ontology:  GO:0003735

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpsN super family cl00355
30S ribosomal protein S14; Reviewed
 21-65 1.95e-14

30S ribosomal protein S14; Reviewed


The actual alignment was detected with superfamily member PTZ00218:

Pssm-ID: 469739  Cd Length: 54  Bit Score: 60.47  E-value: 1.95e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
8P60_RDD     21 KDFGRTNRRCRACFAYNGVIRKYDLMICRRCFREYAGDIGFKIYD 65
Cdd:PTZ00218 10 RTYGKGSRQCRVCSNRHGLIRKYGLNVCRQCFRENAELIGFHKYR 54
 
Name Accession Description Interval E-value
PTZ00218 PTZ00218
40S ribosomal protein S29; Provisional
 21-65 1.95e-14

40S ribosomal protein S29; Provisional


Pssm-ID: 185518  Cd Length: 54  Bit Score: 60.47  E-value: 1.95e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
8P60_RDD     21 KDFGRTNRRCRACFAYNGVIRKYDLMICRRCFREYAGDIGFKIYD 65
Cdd:PTZ00218 10 RTYGKGSRQCRVCSNRHGLIRKYGLNVCRQCFRENAELIGFHKYR 54
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 24-56 5.64e-04

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 33.92  E-value: 5.64e-04
                         10        20        30
                 ....*....|....*....|....*....|...
8P60_RDD      24 GRTNRRCRACFAYNGVIRKYDLmiCRRCFREYA 56
Cdd:pfam00253 12 TRIRNRCRLTGRPRGVIRKFGL--CRICFRELA 42
 
Name Accession Description Interval E-value
PTZ00218 PTZ00218
40S ribosomal protein S29; Provisional
 21-65 1.95e-14

40S ribosomal protein S29; Provisional


Pssm-ID: 185518  Cd Length: 54  Bit Score: 60.47  E-value: 1.95e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
8P60_RDD     21 KDFGRTNRRCRACFAYNGVIRKYDLMICRRCFREYAGDIGFKIYD 65
Cdd:PTZ00218 10 RTYGKGSRQCRVCSNRHGLIRKYGLNVCRQCFRENAELIGFHKYR 54
rps14P PRK05766
30S ribosomal protein S14P; Reviewed
 20-65 1.47e-12

30S ribosomal protein S14P; Reviewed


Pssm-ID: 235598  Cd Length: 52  Bit Score: 55.67  E-value: 1.47e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
8P60_RDD     20 RKDFGRTNRRCRACFAYNGVIRKYDLMICRRCFREYAGDIGFKIYD 65
Cdd:PRK05766  7 KRKYGKGARECQRCGRKQGLIRKYGLYLCRQCFREVAPKLGFKKYS 52
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 24-56 5.64e-04

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 33.92  E-value: 5.64e-04
                         10        20        30
                 ....*....|....*....|....*....|...
8P60_RDD      24 GRTNRRCRACFAYNGVIRKYDLmiCRRCFREYA 56
Cdd:pfam00253 12 TRIRNRCRLTGRPRGVIRKFGL--CRICFRELA 42
rpsN PRK08061
type Z 30S ribosomal protein S14;
25-56 9.07e-03

type Z 30S ribosomal protein S14;


Pssm-ID: 181216  Cd Length: 61  Bit Score: 31.00  E-value: 9.07e-03
                        10        20        30
                ....*....|....*....|....*....|..
8P60_RDD     25 RTNRRCRACFAYNGVIRKYDlmICRRCFREYA 56
Cdd:PRK08061 19 RAYTRCERCGRPHSVYRKFG--LCRICFRELA 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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