NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2491198598|pdb|8GLP|SZ]
View 

Chain SZ, 40S ribosomal protein S25

Protein Classification

eS25 family ribosomal protein( domain architecture ID 10505548)

eS25 family ribosomal protein likely plays a role in general protein synthesis

Gene Ontology:  GO:0003735
PubMed:  24524803
SCOP:  4007308

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S25 pfam03297
S25 ribosomal protein;
19-111 8.82e-42

S25 ribosomal protein;


:

Pssm-ID: 460876  Cd Length: 100  Bit Score: 133.52  E-value: 8.82e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
8GLP_SZ        19 DKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIK 98
Cdd:pfam03297   8 AKAAAAASGGKAKKKKWSKGKVKDKLNNAVLFDKETYDKLLKEVPKYKLITPSVVSERLKINGSLARRALRELESKGLIK 87

                          90
                  ....*....|...
8GLP_SZ        99 LVSKHRAQVIYTR 111
Cdd:pfam03297  88 LVSKHHRQVIYTR 100
 
Name Accession Description Interval E-value
Ribosomal_S25 pfam03297
S25 ribosomal protein;
19-111 8.82e-42

S25 ribosomal protein;


Pssm-ID: 460876  Cd Length: 100  Bit Score: 133.52  E-value: 8.82e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
8GLP_SZ        19 DKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIK 98
Cdd:pfam03297   8 AKAAAAASGGKAKKKKWSKGKVKDKLNNAVLFDKETYDKLLKEVPKYKLITPSVVSERLKINGSLARRALRELESKGLIK 87

                          90
                  ....*....|...
8GLP_SZ        99 LVSKHRAQVIYTR 111
Cdd:pfam03297  88 LVSKHHRQVIYTR 100
RPS25 COG4901
Ribosomal protein S25e [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 51-110 4.41e-09

Ribosomal protein S25e [Translation, ribosomal structure and biogenesis]; Ribosomal protein S25e is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 443929  Cd Length: 108  Bit Score: 50.44  E-value: 4.41e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
8GLP_SZ      51 DKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYT 110
Cdd:COG4901  46 TEELLKRVEKEIKKEKYVTPYTLAQKYNVKISVAKKILRELEKRGLLKLVSKNRRTPVYV 105
PRK09334 PRK09334
30S ribosomal protein S25e; Provisional
 51-110 1.29e-07

30S ribosomal protein S25e; Provisional


Pssm-ID: 181784  Cd Length: 86  Bit Score: 45.79  E-value: 1.29e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
8GLP_SZ       51 DKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYT 110
Cdd:PRK09334  25 DEELLKRVAKEVKKEKIVTPYTLASKYGIKISVAKKVLRELEKRGVLVLYSKNRRTPIYV 84
 
Name Accession Description Interval E-value
Ribosomal_S25 pfam03297
S25 ribosomal protein;
19-111 8.82e-42

S25 ribosomal protein;


Pssm-ID: 460876  Cd Length: 100  Bit Score: 133.52  E-value: 8.82e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
8GLP_SZ        19 DKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIK 98
Cdd:pfam03297   8 AKAAAAASGGKAKKKKWSKGKVKDKLNNAVLFDKETYDKLLKEVPKYKLITPSVVSERLKINGSLARRALRELESKGLIK 87

                          90
                  ....*....|...
8GLP_SZ        99 LVSKHRAQVIYTR 111
Cdd:pfam03297  88 LVSKHHRQVIYTR 100
RPS25 COG4901
Ribosomal protein S25e [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 51-110 4.41e-09

Ribosomal protein S25e [Translation, ribosomal structure and biogenesis]; Ribosomal protein S25e is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 443929  Cd Length: 108  Bit Score: 50.44  E-value: 4.41e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
8GLP_SZ      51 DKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYT 110
Cdd:COG4901  46 TEELLKRVEKEIKKEKYVTPYTLAQKYNVKISVAKKILRELEKRGLLKLVSKNRRTPVYV 105
PRK09334 PRK09334
30S ribosomal protein S25e; Provisional
 51-110 1.29e-07

30S ribosomal protein S25e; Provisional


Pssm-ID: 181784  Cd Length: 86  Bit Score: 45.79  E-value: 1.29e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
8GLP_SZ       51 DKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYT 110
Cdd:PRK09334  25 DEELLKRVAKEVKKEKIVTPYTLASKYGIKISVAKKVLRELEKRGVLVLYSKNRRTPIYV 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH