NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2463611820|pdb|8BTR|Le]
View 

Chain Le, Ribosomal protein L31B

Protein Classification

eL31 family ribosomal protein( domain architecture ID 10471907)

eL31 family ribosomal protein contains functional docking sites for other ribosome-attached factors.

Gene Ontology:  GO:0003735|GO:0006412|GO:0005840
PubMed:  24524803|15189156|11904172|11290319

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L31e pfam01198
Ribosomal protein L31e;
6-77 1.10e-18

Ribosomal protein L31e;


:

Pssm-ID: 460108  Cd Length: 82  Bit Score: 73.36  E-value: 1.10e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
8BTR_Le         6 EHTIRLNKAVRGKPSKKAAPIAIRAIRAQVEKLAKVEDVRLDPSVNVFVWSRGIRHVPRRIRLEV-RLEGDDE 77
Cdd:pfam01198   6 EYTINLHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLsRKRNEDE 78
 
Name Accession Description Interval E-value
Ribosomal_L31e pfam01198
Ribosomal protein L31e;
6-77 1.10e-18

Ribosomal protein L31e;


Pssm-ID: 460108  Cd Length: 82  Bit Score: 73.36  E-value: 1.10e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
8BTR_Le         6 EHTIRLNKAVRGKPSKKAAPIAIRAIRAQVEKLAKVEDVRLDPSVNVFVWSRGIRHVPRRIRLEV-RLEGDDE 77
Cdd:pfam01198   6 EYTINLHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLsRKRNEDE 78
Ribosomal_L31e cd00463
Eukaryotic/archaeal ribosomal protein L31; Ribosomal protein L31e, which is present in archaea ...
 6-77 3.69e-17

Eukaryotic/archaeal ribosomal protein L31; Ribosomal protein L31e, which is present in archaea and eukaryotes, binds the 23S rRNA and is one of six protein components encircling the polypeptide exit tunnel. It is a component of the eukaryotic 60S (large) ribosomal subunit, and the archaeal 50S (large) ribosomal subunit.


Pssm-ID: 199209  Cd Length: 83  Bit Score: 69.52  E-value: 3.69e-17
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
8BTR_Le       6 EHTIRLNKAVRGkPSKKAAPIAIRAIRAQVEKLAKVEDVRLDPSVNVFVWSRGIRHVPRRIRLEVRLEGDDE 77
Cdd:cd00463   8 EYTINLRKRKHV-PRKKRAPRAIKEIRKFAAKHMKTEDVRIDPKLNEAIWSRGIEKPPRRVRVRVSRKREET 78
PTZ00193 PTZ00193
60S ribosomal protein L31; Provisional
 3-97 3.04e-15

60S ribosomal protein L31; Provisional


Pssm-ID: 140220 [Multi-domain]  Cd Length: 188  Bit Score: 67.36  E-value: 3.04e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
8BTR_Le        3 IVYEHTIRLNKAVRGKPSKKAAPIAIRAIRAQVEKLAKVEDVRLDPSVNVFVWSRGIRHVPRRIRLEVR-----LEGDDE 77
Cdd:PTZ00193  84 ISMEATIHLSKLLKKKTFHKRAPIAIKRIKAFVGRLMKTKDNRIDASLNTYIWHKGVKGVPGRVRVLVErksetLEGGKR 163

                         90       100
                 ....*....|....*....|.
8BTR_Le       78 HKFAYVI-NKDVENFKHLTTE 97
Cdd:PTZ00193 164 KHFYTVIsNVPVASFKNLTTK 184
RPL31A COG2097
Ribosomal protein L31E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 6-77 9.53e-14

Ribosomal protein L31E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441700  Cd Length: 89  Bit Score: 61.02  E-value: 9.53e-14
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
8BTR_Le       6 EHTIRLNKAVRGkPSKKAAPIAIRAIRAQVEKLAKVE--DVRLDPSVNVFVWSRGIRHVPRRIRLEVRLEGDDE 77
Cdd:COG2097  10 VYTIPLRKVKLA-PRTKRADRAIKLIREFLARHMKVEeeKVKIDPSLNEKIWSRGREKPPRKVRVRAVKFEEGE 82
 
Name Accession Description Interval E-value
Ribosomal_L31e pfam01198
Ribosomal protein L31e;
6-77 1.10e-18

Ribosomal protein L31e;


Pssm-ID: 460108  Cd Length: 82  Bit Score: 73.36  E-value: 1.10e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
8BTR_Le         6 EHTIRLNKAVRGKPSKKAAPIAIRAIRAQVEKLAKVEDVRLDPSVNVFVWSRGIRHVPRRIRLEV-RLEGDDE 77
Cdd:pfam01198   6 EYTINLHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLsRKRNEDE 78
Ribosomal_L31e cd00463
Eukaryotic/archaeal ribosomal protein L31; Ribosomal protein L31e, which is present in archaea ...
 6-77 3.69e-17

Eukaryotic/archaeal ribosomal protein L31; Ribosomal protein L31e, which is present in archaea and eukaryotes, binds the 23S rRNA and is one of six protein components encircling the polypeptide exit tunnel. It is a component of the eukaryotic 60S (large) ribosomal subunit, and the archaeal 50S (large) ribosomal subunit.


Pssm-ID: 199209  Cd Length: 83  Bit Score: 69.52  E-value: 3.69e-17
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
8BTR_Le       6 EHTIRLNKAVRGkPSKKAAPIAIRAIRAQVEKLAKVEDVRLDPSVNVFVWSRGIRHVPRRIRLEVRLEGDDE 77
Cdd:cd00463   8 EYTINLRKRKHV-PRKKRAPRAIKEIRKFAAKHMKTEDVRIDPKLNEAIWSRGIEKPPRRVRVRVSRKREET 78
PTZ00193 PTZ00193
60S ribosomal protein L31; Provisional
 3-97 3.04e-15

60S ribosomal protein L31; Provisional


Pssm-ID: 140220 [Multi-domain]  Cd Length: 188  Bit Score: 67.36  E-value: 3.04e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
8BTR_Le        3 IVYEHTIRLNKAVRGKPSKKAAPIAIRAIRAQVEKLAKVEDVRLDPSVNVFVWSRGIRHVPRRIRLEVR-----LEGDDE 77
Cdd:PTZ00193  84 ISMEATIHLSKLLKKKTFHKRAPIAIKRIKAFVGRLMKTKDNRIDASLNTYIWHKGVKGVPGRVRVLVErksetLEGGKR 163

                         90       100
                 ....*....|....*....|.
8BTR_Le       78 HKFAYVI-NKDVENFKHLTTE 97
Cdd:PTZ00193 164 KHFYTVIsNVPVASFKNLTTK 184
RPL31A COG2097
Ribosomal protein L31E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 6-77 9.53e-14

Ribosomal protein L31E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441700  Cd Length: 89  Bit Score: 61.02  E-value: 9.53e-14
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
8BTR_Le       6 EHTIRLNKAVRGkPSKKAAPIAIRAIRAQVEKLAKVE--DVRLDPSVNVFVWSRGIRHVPRRIRLEVRLEGDDE 77
Cdd:COG2097  10 VYTIPLRKVKLA-PRTKRADRAIKLIREFLARHMKVEeeKVKIDPSLNEKIWSRGREKPPRKVRVRAVKFEEGE 82
PRK01192 PRK01192
50S ribosomal protein L31e; Reviewed
 6-76 7.86e-13

50S ribosomal protein L31e; Reviewed


Pssm-ID: 234916  Cd Length: 89  Bit Score: 58.77  E-value: 7.86e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
8BTR_Le        6 EHTIRLNKAVRGkPSKKAAPIAIRAIRAQVEKLAKVE--DVRLDPSVNVFVWSRGIRHVPRRIRLEVRLEGDD 76
Cdd:PRK01192   9 IYTIPLRDVKKV-PRTKRADRAVKLVREFLARHFKADedKVKIDPSINEKIWERGREKPPSKVRVRVAKKGED 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH