NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2563386336|pdb|8ANY|X]
View 

Chain X, 39S ribosomal protein L28, mitochondrial

Protein Classification

bL28 family ribosomal protein( domain architecture ID 10467154)

bL28 family ribosomal protein such as prokaryotic 50S ribosomal protein L28 which is part of the large ribosomal subunit (50S), and fungal mitochondrial 54S ribosomal protein L24 (bL28m) which is part of the mitochondrial large ribosomal subunit (54S)

Gene Ontology:  GO:0003735|GO:0006412|GO:0003729
PubMed:  24524803

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L28 pfam00830
Ribosomal L28 family; The ribosomal 28 family includes L28 proteins from bacteria and ...
 88-136 1.56e-06

Ribosomal L28 family; The ribosomal 28 family includes L28 proteins from bacteria and chloroplasts. The L24 protein from yeast also contains a region of similarity to prokaryotic L28 proteins. L24 from yeast is also found in the large ribosomal subunit


:

Pssm-ID: 459953  Cd Length: 58  Bit Score: 44.30  E-value: 1.56e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
8ANY_X         88 GQIYANNDKLSKRL-KKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLID 136
Cdd:pfam00830   9 GPQFGNNVSHSKNKtKRRWKPNLQKKRLWSEELGRFVRLRVSTRALRTID 58
 
Name Accession Description Interval E-value
Ribosomal_L28 pfam00830
Ribosomal L28 family; The ribosomal 28 family includes L28 proteins from bacteria and ...
 88-136 1.56e-06

Ribosomal L28 family; The ribosomal 28 family includes L28 proteins from bacteria and chloroplasts. The L24 protein from yeast also contains a region of similarity to prokaryotic L28 proteins. L24 from yeast is also found in the large ribosomal subunit


Pssm-ID: 459953  Cd Length: 58  Bit Score: 44.30  E-value: 1.56e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
8ANY_X         88 GQIYANNDKLSKRL-KKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLID 136
Cdd:pfam00830   9 GPQFGNNVSHSKNKtKRRWKPNLQKKRLWSEELGRFVRLRVSTRALRTID 58
 
Name Accession Description Interval E-value
Ribosomal_L28 pfam00830
Ribosomal L28 family; The ribosomal 28 family includes L28 proteins from bacteria and ...
 88-136 1.56e-06

Ribosomal L28 family; The ribosomal 28 family includes L28 proteins from bacteria and chloroplasts. The L24 protein from yeast also contains a region of similarity to prokaryotic L28 proteins. L24 from yeast is also found in the large ribosomal subunit


Pssm-ID: 459953  Cd Length: 58  Bit Score: 44.30  E-value: 1.56e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
8ANY_X         88 GQIYANNDKLSKRL-KKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLID 136
Cdd:pfam00830   9 GPQFGNNVSHSKNKtKRRWKPNLQKKRLWSEELGRFVRLRVSTRALRTID 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH