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Conserved domains on  [gi|2095360570|pdb|7OIC|1]
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Chain 1, 39S ribosomal protein L33, mitochondrial

Protein Classification

bL33 family ribosomal protein( domain architecture ID 10452618)

bL33 family ribosomal protein such as mammalian mitochondrial 39S ribosomal protein L33, bacterial 50S ribosomal protein L33, and fungal mitochondrial 54S ribosomal protein L39

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L33 pfam00471
Ribosomal protein L33;
17-60 2.54e-09

Ribosomal protein L33;


:

Pssm-ID: 425701  Cd Length: 46  Bit Score: 47.04  E-value: 2.54e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
7OIC_1        17 LVRMVSEAGTGFCFNTKRNR--LREKLTLLHYDPVVKQRVLFVEKK 60
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKknTPERLELKKYCPKCRKHTLHKETK 46
 
Name Accession Description Interval E-value
Ribosomal_L33 pfam00471
Ribosomal protein L33;
17-60 2.54e-09

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 47.04  E-value: 2.54e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
7OIC_1        17 LVRMVSEAGTGFCFNTKRNR--LREKLTLLHYDPVVKQRVLFVEKK 60
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKknTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 12-60 1.34e-05

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 37.81  E-value: 1.34e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
7OIC_1        12 KSKNILVRMVSEAGTGFCFNTKRNR--LREKLTLLHYDPVVKQRVLFVEKK 60
Cdd:TIGR01023  4 KGARELIRLVCTACTGINYTTTKNRrnKPEKLELRKYCPVCRKHVLHKEAK 54
 
Name Accession Description Interval E-value
Ribosomal_L33 pfam00471
Ribosomal protein L33;
17-60 2.54e-09

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 47.04  E-value: 2.54e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
7OIC_1        17 LVRMVSEAGTGFCFNTKRNR--LREKLTLLHYDPVVKQRVLFVEKK 60
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKknTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 12-60 1.34e-05

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 37.81  E-value: 1.34e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
7OIC_1        12 KSKNILVRMVSEAGTGFCFNTKRNR--LREKLTLLHYDPVVKQRVLFVEKK 60
Cdd:TIGR01023  4 KGARELIRLVCTACTGINYTTTKNRrnKPEKLELRKYCPVCRKHVLHKEAK 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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