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Conserved domains on  [gi|1845940507|pdb|7BST|G]
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Chain G, Overcome classical restriction gp0.3

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ocr super family cl07342
DNA mimic ocr; The structure of an ocr protein from bacteriophage T7 has shown that this ...
 3-103 1.77e-62

DNA mimic ocr; The structure of an ocr protein from bacteriophage T7 has shown that this protein mimics the size and shape of a bent DNA molecule. ocr has also been shown to be an inhibitor of the complex type I DNA restriction enzymes.


The actual alignment was detected with superfamily member pfam08684:

Pssm-ID: 430152  Cd Length: 101  Bit Score: 185.64  E-value: 1.77e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7BST_G          3 MSNMTYNNVFDHAYEMLKENIRYDDIRDTDDLHDAIHMAADNAVPHYYADIFSVMASEGIDLEFEDSGLMPDTKDVIRIL 82
Cdd:pfam08684   1 MSNMTYNDVFDHAYELLKENIRYDDIRDEDDLHDAIHEAADNAVPHWYADIFSVMASDGIDLEFDDSGLMPDTKDVIRIL 80

                          90       100
                  ....*....|....*....|.
7BST_G         83 QARIYEQLTIDLWEDAEDLLN 103
Cdd:pfam08684  81 QARIHEQLTIDLWEDAEDLLN 101
 
Name Accession Description Interval E-value
ocr pfam08684
DNA mimic ocr; The structure of an ocr protein from bacteriophage T7 has shown that this ...
 3-103 1.77e-62

DNA mimic ocr; The structure of an ocr protein from bacteriophage T7 has shown that this protein mimics the size and shape of a bent DNA molecule. ocr has also been shown to be an inhibitor of the complex type I DNA restriction enzymes.


Pssm-ID: 430152  Cd Length: 101  Bit Score: 185.64  E-value: 1.77e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7BST_G          3 MSNMTYNNVFDHAYEMLKENIRYDDIRDTDDLHDAIHMAADNAVPHYYADIFSVMASEGIDLEFEDSGLMPDTKDVIRIL 82
Cdd:pfam08684   1 MSNMTYNDVFDHAYELLKENIRYDDIRDEDDLHDAIHEAADNAVPHWYADIFSVMASDGIDLEFDDSGLMPDTKDVIRIL 80

                          90       100
                  ....*....|....*....|.
7BST_G         83 QARIYEQLTIDLWEDAEDLLN 103
Cdd:pfam08684  81 QARIHEQLTIDLWEDAEDLLN 101
 
Name Accession Description Interval E-value
ocr pfam08684
DNA mimic ocr; The structure of an ocr protein from bacteriophage T7 has shown that this ...
 3-103 1.77e-62

DNA mimic ocr; The structure of an ocr protein from bacteriophage T7 has shown that this protein mimics the size and shape of a bent DNA molecule. ocr has also been shown to be an inhibitor of the complex type I DNA restriction enzymes.


Pssm-ID: 430152  Cd Length: 101  Bit Score: 185.64  E-value: 1.77e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7BST_G          3 MSNMTYNNVFDHAYEMLKENIRYDDIRDTDDLHDAIHMAADNAVPHYYADIFSVMASEGIDLEFEDSGLMPDTKDVIRIL 82
Cdd:pfam08684   1 MSNMTYNDVFDHAYELLKENIRYDDIRDEDDLHDAIHEAADNAVPHWYADIFSVMASDGIDLEFDDSGLMPDTKDVIRIL 80

                          90       100
                  ....*....|....*....|.
7BST_G         83 QARIYEQLTIDLWEDAEDLLN 103
Cdd:pfam08684  81 QARIHEQLTIDLWEDAEDLLN 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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