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Conserved domains on  [gi|1979446014|pdb|6TH6|At]
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Chain At, 30S ribosomal protein S17e

Protein Classification

similar to 30S ribosomal protein S17e( domain architecture ID 10003623)

protein similar to 30S ribosomal protein S17e

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RPS17A COG1383
Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-63 1.47e-31

Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


:

Pssm-ID: 440993  Cd Length: 63  Bit Score: 103.79  E-value: 1.47e-31
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|...
6TH6_At      1 MGNIKQTFIKRTARELFDRYPDKFTRDFEHNKKMVAELTNVTSKTIRNRIAGYITRLVRMKEE 63
Cdd:COG1383  1 MGNIRPTYIKRIARELLEKYPDLFTEDFEENKKLVEELTDVESKRVRNRIAGYITRKVKKRKR 63
 
Name Accession Description Interval E-value
RPS17A COG1383
Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-63 1.47e-31

Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 440993  Cd Length: 63  Bit Score: 103.79  E-value: 1.47e-31
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|...
6TH6_At      1 MGNIKQTFIKRTARELFDRYPDKFTRDFEHNKKMVAELTNVTSKTIRNRIAGYITRLVRMKEE 63
Cdd:COG1383  1 MGNIRPTYIKRIARELLEKYPDLFTEDFEENKKLVEELTDVESKRVRNRIAGYITRKVKKRKR 63
rps17E PRK01151
30S ribosomal protein S17e; Validated
 2-59 3.96e-31

30S ribosomal protein S17e; Validated


Pssm-ID: 179234  Cd Length: 58  Bit Score: 102.64  E-value: 3.96e-31
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
6TH6_At       2 GNIKQTFIKRTARELFDRYPDKFTRDFEHNKKMVAELTNVTSKTIRNRIAGYITRLVR 59
Cdd:PRK01151  1 GNIRPKYIKRTAEELLEKYPDLFTTDFETNKKLVEELTNIESKKVRNRIAGYITRKVK 58
Ribosomal_S17e pfam00833
Ribosomal S17;
1-66 1.12e-12

Ribosomal S17;


Pssm-ID: 425895  Cd Length: 122  Bit Score: 57.64  E-value: 1.12e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
6TH6_At         1 MGNIKQTFIKRTARELFDRYPDKFTRDFEHNKKMVAELTNVTSKTIRNRIAGYITRLVRMKEEGKI 66
Cdd:pfam00833   1 MGRVRTKTVKKAARVIIEKYYSRLTNDFHTNKRICEEVAIIPSKRLRNKIAGYVTHLMKRIQRGPV 66
 
Name Accession Description Interval E-value
RPS17A COG1383
Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-63 1.47e-31

Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 440993  Cd Length: 63  Bit Score: 103.79  E-value: 1.47e-31
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|...
6TH6_At      1 MGNIKQTFIKRTARELFDRYPDKFTRDFEHNKKMVAELTNVTSKTIRNRIAGYITRLVRMKEE 63
Cdd:COG1383  1 MGNIRPTYIKRIARELLEKYPDLFTEDFEENKKLVEELTDVESKRVRNRIAGYITRKVKKRKR 63
rps17E PRK01151
30S ribosomal protein S17e; Validated
 2-59 3.96e-31

30S ribosomal protein S17e; Validated


Pssm-ID: 179234  Cd Length: 58  Bit Score: 102.64  E-value: 3.96e-31
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
6TH6_At       2 GNIKQTFIKRTARELFDRYPDKFTRDFEHNKKMVAELTNVTSKTIRNRIAGYITRLVR 59
Cdd:PRK01151  1 GNIRPKYIKRTAEELLEKYPDLFTTDFETNKKLVEELTNIESKKVRNRIAGYITRKVK 58
Ribosomal_S17e pfam00833
Ribosomal S17;
1-66 1.12e-12

Ribosomal S17;


Pssm-ID: 425895  Cd Length: 122  Bit Score: 57.64  E-value: 1.12e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
6TH6_At         1 MGNIKQTFIKRTARELFDRYPDKFTRDFEHNKKMVAELTNVTSKTIRNRIAGYITRLVRMKEEGKI 66
Cdd:pfam00833   1 MGRVRTKTVKKAARVIIEKYYSRLTNDFHTNKRICEEVAIIPSKRLRNKIAGYVTHLMKRIQRGPV 66
PTZ00154 PTZ00154
40S ribosomal protein S17; Provisional
 1-59 8.11e-12

40S ribosomal protein S17; Provisional


Pssm-ID: 240295  Cd Length: 134  Bit Score: 55.80  E-value: 8.11e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
6TH6_At        1 MGNIKQTFIKRTARELFDRYPDKFTRDFEHNKKMVAELTNVTSKTIRNRIAGYITRLVR 59
Cdd:PTZ00154   1 MGRVRTKTVKRAARQIVEKYYSKLTLDFHTNKKIVEEVAIIPSKRLRNKIAGFVTHLMK 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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