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Conserved domains on  [gi|1890521184|pdb|6N8M|R]
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Chain R, 60S ribosomal protein L43-A

Protein Classification

eL43 family ribosomal protein( domain architecture ID 10015313)

eL43 family ribosomal protein is a 60S ribosomal subunit, similar to fungal 60S ribosomal protein L43 and Dictyostelium discoideum 60S ribosomal protein L37a

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803|8477735|24524803
SCOP:  4003704

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00255 PTZ00255
60S ribosomal protein L37a; Provisional
 1-88 1.19e-42

60S ribosomal protein L37a; Provisional


:

Pssm-ID: 240332  Cd Length: 90  Bit Score: 133.68  E-value: 1.19e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6N8M_R        1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVR 80
Cdd:PTZ00255  1 MAKRTKKVGITGKYGTRYGASLRKQIKKIEISQHAKYFCPFCGKHAVKRQAVGIWRCKGCKKTVAGGAWTLSTPAASTVR 80


                ....*...
6N8M_R       81 STIRRLRE 88
Cdd:PTZ00255 81 STIRRLRK 88
 
Name Accession Description Interval E-value
PTZ00255 PTZ00255
60S ribosomal protein L37a; Provisional
 1-88 1.19e-42

60S ribosomal protein L37a; Provisional


Pssm-ID: 240332  Cd Length: 90  Bit Score: 133.68  E-value: 1.19e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6N8M_R        1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVR 80
Cdd:PTZ00255  1 MAKRTKKVGITGKYGTRYGASLRKQIKKIEISQHAKYFCPFCGKHAVKRQAVGIWRCKGCKKTVAGGAWTLSTPAASTVR 80


                ....*...
6N8M_R       81 STIRRLRE 88
Cdd:PTZ00255 81 STIRRLRK 88
eL43_euk_arch TIGR00280
ribosomal protein eL43; This model finds eukaryotic ribosomal protein eL43 (previously L37a) ...
 1-92 1.75e-39

ribosomal protein eL43; This model finds eukaryotic ribosomal protein eL43 (previously L37a) and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272996  Cd Length: 92  Bit Score: 126.14  E-value: 1.75e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6N8M_R         1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVR 80
Cdd:TIGR00280  1 MMKRTKKVGITGRFGPRYGLKLRRQVKKIEIQQKAKYVCPFCGKKTVKRGSTGIWTCRKCGAKFAGGAYTPVTPAGKTVR 80

                         90
                 ....*....|..
6N8M_R        81 STIRRLREMVEA 92
Cdd:TIGR00280 81 KTIRRIVEMKEA 92
Ribosomal_L37ae pfam01780
Ribosomal L37ae protein family; This ribosomal protein is found in archaebacteria and ...
 11-88 6.60e-36

Ribosomal L37ae protein family; This ribosomal protein is found in archaebacteria and eukaryotes. It contains four conserved cysteine residues that may bind to zinc.


Pssm-ID: 460325  Cd Length: 78  Bit Score: 116.50  E-value: 6.60e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
6N8M_R        11 TGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVRSTIRRLRE 88
Cdd:pfam01780  1 AGKYGTRYGASLRKMVKKIEISQHAKYTCPFCGKTKVKRVAVGIWHCKKCGKTFAGGAYTPTTPSAVTVKSAIRRLKE 78
RPL43A COG1997
Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]; Ribosomal ...
 1-86 1.09e-26

Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]; Ribosomal protein L37AE/L43A is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441600  Cd Length: 87  Bit Score: 93.45  E-value: 1.09e-26
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6N8M_R       1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVR 80
Cdd:COG1997  1 MMKKTKKVGSAGRFGPRYGRKLRKRVADIEEKMRAKHTCPECGSKRVKRVATGIWECRKCGYKFAGGAYVPETPAGKTVG 80


               ....*.
6N8M_R      81 STIRRL 86
Cdd:COG1997 81 RAIKRA 86
 
Name Accession Description Interval E-value
PTZ00255 PTZ00255
60S ribosomal protein L37a; Provisional
 1-88 1.19e-42

60S ribosomal protein L37a; Provisional


Pssm-ID: 240332  Cd Length: 90  Bit Score: 133.68  E-value: 1.19e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6N8M_R        1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVR 80
Cdd:PTZ00255  1 MAKRTKKVGITGKYGTRYGASLRKQIKKIEISQHAKYFCPFCGKHAVKRQAVGIWRCKGCKKTVAGGAWTLSTPAASTVR 80


                ....*...
6N8M_R       81 STIRRLRE 88
Cdd:PTZ00255 81 STIRRLRK 88
eL43_euk_arch TIGR00280
ribosomal protein eL43; This model finds eukaryotic ribosomal protein eL43 (previously L37a) ...
 1-92 1.75e-39

ribosomal protein eL43; This model finds eukaryotic ribosomal protein eL43 (previously L37a) and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272996  Cd Length: 92  Bit Score: 126.14  E-value: 1.75e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6N8M_R         1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVR 80
Cdd:TIGR00280  1 MMKRTKKVGITGRFGPRYGLKLRRQVKKIEIQQKAKYVCPFCGKKTVKRGSTGIWTCRKCGAKFAGGAYTPVTPAGKTVR 80

                         90
                 ....*....|..
6N8M_R        81 STIRRLREMVEA 92
Cdd:TIGR00280 81 KTIRRIVEMKEA 92
Ribosomal_L37ae pfam01780
Ribosomal L37ae protein family; This ribosomal protein is found in archaebacteria and ...
 11-88 6.60e-36

Ribosomal L37ae protein family; This ribosomal protein is found in archaebacteria and eukaryotes. It contains four conserved cysteine residues that may bind to zinc.


Pssm-ID: 460325  Cd Length: 78  Bit Score: 116.50  E-value: 6.60e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
6N8M_R        11 TGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVRSTIRRLRE 88
Cdd:pfam01780  1 AGKYGTRYGASLRKMVKKIEISQHAKYTCPFCGKTKVKRVAVGIWHCKKCGKTFAGGAYTPTTPSAVTVKSAIRRLKE 78
rpl37ae PRK03976
50S ribosomal protein L37Ae; Reviewed
 1-85 4.63e-27

50S ribosomal protein L37Ae; Reviewed


Pssm-ID: 235183  Cd Length: 90  Bit Score: 94.26  E-value: 4.63e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6N8M_R        1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVR 80
Cdd:PRK03976  1 MMSRTKKVGSAGRFGARYGRKIRKRVADIEEKMRAKHVCPVCGRPKVKRVGTGIWECRKCGAKFAGGAYTPETPAGKTVT 80


                ....*
6N8M_R       81 STIRR 85
Cdd:PRK03976 81 RAIRR 85
RPL43A COG1997
Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]; Ribosomal ...
 1-86 1.09e-26

Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]; Ribosomal protein L37AE/L43A is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441600  Cd Length: 87  Bit Score: 93.45  E-value: 1.09e-26
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6N8M_R       1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVR 80
Cdd:COG1997  1 MMKKTKKVGSAGRFGPRYGRKLRKRVADIEEKMRAKHTCPECGSKRVKRVATGIWECRKCGYKFAGGAYVPETPAGKTVG 80


               ....*.
6N8M_R      81 STIRRL 86
Cdd:COG1997 81 RAIKRA 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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