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Conserved domains on  [gi|1227487111|pdb|5NJT|N]
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Chain N, 30S ribosomal protein S14

Protein Classification

30S ribosomal protein S14( domain architecture ID 10012995)

30S ribosomal protein S14 type Z is located in the peptidyl transferase center and involved in assembly of the 30S ribosome subunit

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpsN PRK08061
type Z 30S ribosomal protein S14;
1-60 3.00e-35

type Z 30S ribosomal protein S14;


:

Pssm-ID: 181216  Cd Length: 61  Bit Score: 112.66  E-value: 3.00e-35
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
5NJT_N        1 AKKSMIAKQQRTPKFKVQEYTRCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKASW 60
Cdd:PRK08061  2 AKKSLIAKAKRKPKFKVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61
 
Name Accession Description Interval E-value
rpsN PRK08061
type Z 30S ribosomal protein S14;
1-60 3.00e-35

type Z 30S ribosomal protein S14;


Pssm-ID: 181216  Cd Length: 61  Bit Score: 112.66  E-value: 3.00e-35
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
5NJT_N        1 AKKSMIAKQQRTPKFKVQEYTRCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKASW 60
Cdd:PRK08061  2 AKKSLIAKAKRKPKFKVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 1-60 1.05e-31

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 103.55  E-value: 1.05e-31
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|
5NJT_N       1 AKKSMIAKQQRTPKfKVQEYTRCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKASW 60
Cdd:COG0199  2 AKKSMIARNKKRPK-PVRLRNRCELTGRPRGYYRKFGLCRICFRELAHRGEIPGVKKASW 60
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 8-59 6.36e-23

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 81.30  E-value: 6.36e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
5NJT_N         8 KQQRTPKFK--VQEYTRCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKAS 59
Cdd:pfam00253  1 KLQKLPRNSspTRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKKAS 54
 
Name Accession Description Interval E-value
rpsN PRK08061
type Z 30S ribosomal protein S14;
1-60 3.00e-35

type Z 30S ribosomal protein S14;


Pssm-ID: 181216  Cd Length: 61  Bit Score: 112.66  E-value: 3.00e-35
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
5NJT_N        1 AKKSMIAKQQRTPKFKVQEYTRCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKASW 60
Cdd:PRK08061  2 AKKSLIAKAKRKPKFKVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 1-60 1.05e-31

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 103.55  E-value: 1.05e-31
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|
5NJT_N       1 AKKSMIAKQQRTPKfKVQEYTRCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKASW 60
Cdd:COG0199  2 AKKSMIARNKKRPK-PVRLRNRCELTGRPRGYYRKFGLCRICFRELAHRGEIPGVKKASW 60
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 8-59 6.36e-23

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 81.30  E-value: 6.36e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
5NJT_N         8 KQQRTPKFK--VQEYTRCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKAS 59
Cdd:pfam00253  1 KLQKLPRNSspTRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKKAS 54
rpsN PRK08881
30S ribosomal protein S14; Reviewed
 22-60 5.20e-19

30S ribosomal protein S14; Reviewed


Pssm-ID: 181574  Cd Length: 101  Bit Score: 72.88  E-value: 5.20e-19
                         10        20        30
                 ....*....|....*....|....*....|....*....
5NJT_N        22 RCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKASW 60
Cdd:PRK08881  63 RCELTGRPRGYYRKFGLSRIKLRELAHRGEIPGVVKASW 101
rpsN PRK06911
30S ribosomal protein S14; Reviewed
 17-60 1.07e-10

30S ribosomal protein S14; Reviewed


Pssm-ID: 180742 [Multi-domain]  Cd Length: 100  Bit Score: 51.99  E-value: 1.07e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
5NJT_N        17 VQEYTRCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKASW 60
Cdd:PRK06911  57 VRYVTRCKQCGRPHAVYRKFNLCRICLRQQLMVGNIPGGRKSSW 100
rps14 CHL00074
ribosomal protein S14
 22-60 9.35e-08

ribosomal protein S14


Pssm-ID: 214354  Cd Length: 100  Bit Score: 44.41  E-value: 9.35e-08
                         10        20        30
                 ....*....|....*....|....*....|....*....
5NJT_N        22 RCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKASW 60
Cdd:CHL00074  62 RCFLTGRPRGNYRDFGLSRHVLREMAHACLLPGVTKSSW 100
rps14P PRK05766
30S ribosomal protein S14P; Reviewed
 22-49 6.06e-05

30S ribosomal protein S14P; Reviewed


Pssm-ID: 235598  Cd Length: 52  Bit Score: 36.02  E-value: 6.06e-05
                        10        20        30
                ....*....|....*....|....*....|
5NJT_N       22 RCERCGRPHSVIRKF--KLCRICFRELAYK 49
Cdd:PRK05766 16 ECQRCGRKQGLIRKYglYLCRQCFREVAPK 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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