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Conserved domains on  [gi|1979431733|pdb|5MYJ|AG]
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Chain AG, 30S ribosomal protein S7

Protein Classification

30S ribosomal protein S7( domain architecture ID 10792463)

30S ribosomal protein S7 is an assembly initiator protein which participates in the assembly of the bacterial 30S ribosomal subunit

Gene Symbol:  rpsG
Gene Ontology:  GO:0003735|GO:0015935|GO:0019843
PubMed:  11160889

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 1-155 5.31e-107

30S ribosomal protein S7; Validated


:

Pssm-ID: 235398  Cd Length: 156  Bit Score: 301.64  E-value: 5.31e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG        1 MRKNRAPKREVLADPMYNSIVVTRLINRVMLDGKRGVAAQIVYGAFKQIEEATGNNPLEVFETAMENIMPVLEVRARRVG 80
Cdd:PRK05302   2 PRRRRAPKREVLPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEEKTGKDPLEVFEKALENVKPVVEVKSRRVG 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
5MYJ_AG       81 GSNYQVPVEVRPERRTTLGLRWLVTIARNRGEHTMQDRLAKEILDAANNTGAAVKKREDTHKMAEANRAFAHFRW 155
Cdd:PRK05302  82 GATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERLANELLDAANNRGAAVKKREDTHRMAEANKAFAHYRW 156
 
Name Accession Description Interval E-value
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 1-155 5.31e-107

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 301.64  E-value: 5.31e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG        1 MRKNRAPKREVLADPMYNSIVVTRLINRVMLDGKRGVAAQIVYGAFKQIEEATGNNPLEVFETAMENIMPVLEVRARRVG 80
Cdd:PRK05302   2 PRRRRAPKREVLPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEEKTGKDPLEVFEKALENVKPVVEVKSRRVG 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
5MYJ_AG       81 GSNYQVPVEVRPERRTTLGLRWLVTIARNRGEHTMQDRLAKEILDAANNTGAAVKKREDTHKMAEANRAFAHFRW 155
Cdd:PRK05302  82 GATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERLANELLDAANNRGAAVKKREDTHRMAEANKAFAHYRW 156
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 2-155 4.55e-106

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 299.28  E-value: 4.55e-106
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG       2 RKNRAPKREVLADPMYNSIVVTRLINRVMLDGKRGVAAQIVYGAFKQIEEATGNNPLEVFETAMENIMPVLEVRARRVGG 81
Cdd:COG0049   3 RRGRAPKREVLPDPKYNSVLVTKFINKIMLDGKKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLVEVKSRRVGG 82

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
5MYJ_AG      82 SNYQVPVEVRPERRTTLGLRWLVTIARNRGEHTMQDRLAKEILDAANNTGAAVKKREDTHKMAEANRAFAHFRW 155
Cdd:COG0049  83 ATYQVPVEVRPERRQALAMRWIIDAARKRKEKTMAERLANELLDASNNRGAAVKKREDTHKMAEANKAFAHYRW 156
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 11-148 4.25e-84

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 243.12  E-value: 4.25e-84
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG      11 VLADPMYNSIVVTRLINRVMLDGKRGVAAQIVYGAFKQIEEATGNNPLEVFETAMENIMPVLEVRARRVGGSNYQVPVEV 90
Cdd:cd14869   1 ILPDPKYNSVLVSKFINKLMKDGKKSVAEKIVYDALEIIKKKTGKDPLEVFEKALENVKPLVEVRSRRVGGATYQVPVEV 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
5MYJ_AG      91 RPERRTTLGLRWLVTIARNRGEHTMQDRLAKEILDAANNTGAAVKKREDTHKMAEANR 148
Cdd:cd14869  81 RPERRQSLALRWIIEAARKRKEKSMAEKLAAELLDAANNTGAAVKKKEDTHKMAEANK 138
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 2-155 8.41e-84

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 242.97  E-value: 8.41e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG         2 RKNRAPKREVLADPMYNSIVVTRLINRVMLDGKRGVAAQIVYGAFKQIEEATGNNPLEVFETAMENIMPVLEVRARRVGG 81
Cdd:TIGR01029   1 RKRKAEKRKIPPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKKTGEDPLEVFEQALENVKPLVEVKSRRVGG 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
5MYJ_AG        82 SNYQVPVEVRPERRTTLGLRWLVTIARNRGEHTMQDRLAKEILDAANNTGAAVKKREDTHKMAEANRAFAHFRW 155
Cdd:TIGR01029  81 ATYQVPVEVRPSRRYALAIRWLIEAARKRGGKSMAERLANEILDAANNTGAAIKKREDTHRMAEANKAFAHYRW 154
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 17-148 2.93e-81

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 235.74  E-value: 2.93e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG        17 YNSIVVTRLINRVMLDGKRGVAAQIVYGAFKQIEEATGNNPLEVFETAMENIMPVLEVRARRVGGSNYQVPVEVRPERRT 96
Cdd:pfam00177   1 YNSPLVEKLINRLMRDGKKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERRV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
5MYJ_AG        97 TLGLRWLVTIARNRGEHTMQDRLAKEILDAANNTGAAVKKREDTHKMAEANR 148
Cdd:pfam00177  81 ALALRWIIEAARKRSEKSMAERLANELIDAANGRGAAVKKKEETHRMAEANR 132
 
Name Accession Description Interval E-value
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 1-155 5.31e-107

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 301.64  E-value: 5.31e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG        1 MRKNRAPKREVLADPMYNSIVVTRLINRVMLDGKRGVAAQIVYGAFKQIEEATGNNPLEVFETAMENIMPVLEVRARRVG 80
Cdd:PRK05302   2 PRRRRAPKREVLPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEEKTGKDPLEVFEKALENVKPVVEVKSRRVG 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
5MYJ_AG       81 GSNYQVPVEVRPERRTTLGLRWLVTIARNRGEHTMQDRLAKEILDAANNTGAAVKKREDTHKMAEANRAFAHFRW 155
Cdd:PRK05302  82 GATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERLANELLDAANNRGAAVKKREDTHRMAEANKAFAHYRW 156
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 2-155 4.55e-106

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 299.28  E-value: 4.55e-106
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG       2 RKNRAPKREVLADPMYNSIVVTRLINRVMLDGKRGVAAQIVYGAFKQIEEATGNNPLEVFETAMENIMPVLEVRARRVGG 81
Cdd:COG0049   3 RRGRAPKREVLPDPKYNSVLVTKFINKIMLDGKKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLVEVKSRRVGG 82

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
5MYJ_AG      82 SNYQVPVEVRPERRTTLGLRWLVTIARNRGEHTMQDRLAKEILDAANNTGAAVKKREDTHKMAEANRAFAHFRW 155
Cdd:COG0049  83 ATYQVPVEVRPERRQALAMRWIIDAARKRKEKTMAERLANELLDASNNRGAAVKKREDTHKMAEANKAFAHYRW 156
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 11-148 4.25e-84

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 243.12  E-value: 4.25e-84
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG      11 VLADPMYNSIVVTRLINRVMLDGKRGVAAQIVYGAFKQIEEATGNNPLEVFETAMENIMPVLEVRARRVGGSNYQVPVEV 90
Cdd:cd14869   1 ILPDPKYNSVLVSKFINKLMKDGKKSVAEKIVYDALEIIKKKTGKDPLEVFEKALENVKPLVEVRSRRVGGATYQVPVEV 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
5MYJ_AG      91 RPERRTTLGLRWLVTIARNRGEHTMQDRLAKEILDAANNTGAAVKKREDTHKMAEANR 148
Cdd:cd14869  81 RPERRQSLALRWIIEAARKRKEKSMAEKLAAELLDAANNTGAAVKKKEDTHKMAEANK 138
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 2-155 8.41e-84

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 242.97  E-value: 8.41e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG         2 RKNRAPKREVLADPMYNSIVVTRLINRVMLDGKRGVAAQIVYGAFKQIEEATGNNPLEVFETAMENIMPVLEVRARRVGG 81
Cdd:TIGR01029   1 RKRKAEKRKIPPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKKTGEDPLEVFEQALENVKPLVEVKSRRVGG 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
5MYJ_AG        82 SNYQVPVEVRPERRTTLGLRWLVTIARNRGEHTMQDRLAKEILDAANNTGAAVKKREDTHKMAEANRAFAHFRW 155
Cdd:TIGR01029  81 ATYQVPVEVRPSRRYALAIRWLIEAARKRGGKSMAERLANEILDAANNTGAAIKKREDTHRMAEANKAFAHYRW 154
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 17-148 2.93e-81

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 235.74  E-value: 2.93e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG        17 YNSIVVTRLINRVMLDGKRGVAAQIVYGAFKQIEEATGNNPLEVFETAMENIMPVLEVRARRVGGSNYQVPVEVRPERRT 96
Cdd:pfam00177   1 YNSPLVEKLINRLMRDGKKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERRV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
5MYJ_AG        97 TLGLRWLVTIARNRGEHTMQDRLAKEILDAANNTGAAVKKREDTHKMAEANR 148
Cdd:pfam00177  81 ALALRWIIEAARKRSEKSMAERLANELIDAANGRGAAVKKKEETHRMAEANR 132
rps7 CHL00053
ribosomal protein S7
 2-154 5.50e-70

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 207.81  E-value: 5.50e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG        2 RKNRAPKREVLADPMYNSIVVTRLINRVMLDGKRGVAAQIVYGAFKQIEEATGNNPLEVFETAMENIMPVLEVRARRVGG 81
Cdd:CHL00053   3 RRGTAKKRTAKPDPIYRNRLVNMLVNRILKSGKKSLAYRIVYRALKKIQQKTEKNPLSVLRQAIRNVTPDVEVKARRVGG 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
5MYJ_AG       82 SNYQVPVEVRPERRTTLGLRWLVTIARNRGEHTMQDRLAKEILDAANNTGAAVKKREDTHKMAEANRAFAHFR 154
Cdd:CHL00053  83 STYQVPIEIGSTRGKALAIRWLLKASRKRSGRNMAFKLSSELVDAAKGSGNAIRKKEETHRMAEANRAFAHFR 155
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 8-153 7.19e-69

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 204.82  E-value: 7.19e-69
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG       8 KREVLADPMYNSIVVTRLINRVMLDGKRGVAAQIVYGAFKQIEEATGNNPLEVFETAMENIMPVLEVRARRVGGSNYQVP 87
Cdd:cd14871   1 KRPIKPDPIYNSRLVNMLVNRILKSGKKSLAYRIVYEALKEIKQKTKQDPLEVLEQAIRNVTPLVEVKARRVGGSTYQVP 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
5MYJ_AG      88 VEVRPERRTTLGLRWLVTIARNRGEHTMQDRLAKEILDAANNTGAAVKKREDTHKMAEANRAFAHF 153
Cdd:cd14871  81 VEVRSERGTALAIRWLLKASRKRSGRSMASKLANEIIDAAKNTGNAIRKKEETHRMAEANKAFAHF 146
uS7_Mitochondria_Mammalian cd14870
Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein ...
 21-154 1.13e-46

Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. MRPS7 shows more homology to bacterial RPS7 than mitochondrial proteins from plants and fungi. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The ribosomes present in mammalian mitochondria have more proteins and low percentage of ribosomal RNA than bacterial ribosomes. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271249  Cd Length: 199  Bit Score: 150.47  E-value: 1.13e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG      21 VVTRLINRVMLDGKRGVAAQIVYGAF-----KQIE---EATGN-------NPLEVFETAMENIMPVLEVRARRVGGSNYQ 85
Cdd:cd14870  50 LVSKFINMMMKKGNKELAREIVEKTLenikrIQLEkyhKATDEekesielNPLVIFHKAVENCKPLLGLTSVKRGGKTYQ 129

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG      86 VPVEVRPERRTTLGLRWLVTIARNRGEHT-MQDRLAKEILDAANNTGAAVKKREDTHKMAEANRAFAHFR 154
Cdd:cd14870 130 VPVPITPNRARFLAMKWLIEACREKKRKIrFPEKLARELLDASNNQGKVVKKKQELHKQCEANRAYAHYR 199
uS7 cd00323
Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the ...
 19-148 1.51e-43

Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271245  Cd Length: 130  Bit Score: 140.08  E-value: 1.51e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG      19 SIVVTRLINRVMLDGKRGVAAQIVYGAFKQIEEATGNNPLEVFETAMENIMPVLEVRARRVGGSNYQVPVEVRPERRTTL 98
Cdd:cd00323   1 KLLLKKFINILMKDGKKSKAEKIFSKALKILKKKTKKNPLKLLVEAIENIKPLVEVRSIKKRGKVYQVPVPLSPNRQVSL 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
5MYJ_AG      99 GLRWLVTIARNRGEHTMQDRLAKEILDAANNTGAAVKKREDTHKMAEANR 148
Cdd:cd00323  81 AIKWLLKAVRKRKETSFAERLANEILDASNNKGASIKKKDDLHKLAEANR 130
uS7_plant cd15484
plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part ...
 21-155 2.37e-38

plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271251  Cd Length: 147  Bit Score: 127.50  E-value: 2.37e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG      21 VVTRLINRVMLDGKRGVAAQIVYGAF---KQIEEATGNNPLEVFETAMENIMPVLEVRARRVGGSNYQVPVEVRPERRTT 97
Cdd:cd15484   3 LIKKFVNFLMKKGKKTKARTILFKTFhllKQKQSAQTEDVLVILVTAVENVKPSFEVRKVRIAGTTQLIPAALSPNKQET 82

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
5MYJ_AG      98 LGLRWLVTIARNRGEHTMQDR------LAKEILDAANNTGAAVKKREDTHKMAEANRAFAHFRW 155
Cdd:cd15484  83 LAIRWILEAAKKKQRKQSKKRysfaycLADEILDASKKQGKARQKRDELHKLAEANRSLAHYRW 146
uS7_Mitochondria_Fungi cd14868
Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP) ...
 21-148 3.14e-26

Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Fungal and plants mitochondrial RPS7 shows less homology to the mammalian than to bacterial RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271247  Cd Length: 151  Bit Score: 96.49  E-value: 3.14e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG      21 VVTRLINRVMLDGKRGVAAQIVYGAFKQIEEATGNNPLEVFETAMENIMPVLEVRARRVGGSNYQVPVEVRPERRTTLGL 100
Cdd:cd14868  24 LLEQLTNLIMKHGKKAKAQRIVSRALLHIHTLTRADPLPLLRQAIDSAAPLVKIKSQKKGAKNVQVPVPLNERQRRRKAI 103

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
5MYJ_AG     101 RWLVTIARNRGEHTMQDRLAKEILDAANNTGAAVKKREDTHKMAEANR 148
Cdd:cd14868 104 KWILEASDKRPGKSFSERLAEEIIAVVEGTSSALEKKEQVHKLAVANR 151
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 21-148 1.43e-22

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 87.99  E-value: 1.43e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG      21 VVTRLINRVML----DGKRGVAAQIVYGAFKQIEEATGNNPLEVFETAMENIMPVLEVRARRVGGSNYQVPVEVRPERRT 96
Cdd:cd14867  49 IVERLINSLMMhgrnTGKKLMAYRIVKHAFEIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRV 128

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
5MYJ_AG      97 TLGLRWLVTIARN---RGEHTMQDRLAKEILDAANNTGA--AVKKREDTHKMAEANR 148
Cdd:cd14867 129 NQALRLIATGAREaafRNIKSIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 185
PRK04027 PRK04027
30S ribosomal protein S7P; Reviewed
 21-148 1.88e-20

30S ribosomal protein S7P; Reviewed


Pssm-ID: 235204  Cd Length: 195  Bit Score: 83.03  E-value: 1.88e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG       21 VVTRLINRVMLD----GKRGVAAQIVYGAFKQIEEATGNNPLEVFETAMENIMPVLEVRARRVGGSNYQVPVEVRPERRT 96
Cdd:PRK04027  59 IVERLINKLMRTerntGKKQKAYNIVKEAFEIIEKRTKQNPIQVLVDAIENAAPREETTRIKYGGISYPKAVDVSPQRRV 138

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
5MYJ_AG       97 TLGLRWLVTIARN---RGEHTMQDRLAKEILDAANNTGA--AVKKREDTHKMAEANR 148
Cdd:PRK04027 139 DLALRFIAEGARQasfKNKKSIEEALAEEIIAAANNDPKsyAVRKKEEIERVAKSAR 195
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 21-148 3.87e-14

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 66.33  E-value: 3.87e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MYJ_AG       21 VVTRLINRVML----DGKRGVAAQIVYGAFKQIEEATGNNPLEVFETAMENIMPVLEVRARRVGGSNYQVPVEVRPERRT 96
Cdd:PTZ00091  57 IVERLVNSLMFhgrnNGKKLLAVRIVKHAFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRV 136

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
5MYJ_AG       97 TLGLRWLVTIARN---RGEHTMQDRLAKEILDAANNTGA--AVKKREDTHKMAEANR 148
Cdd:PTZ00091 137 NQAIYLICKGAREaafRNIKTIAECLADEIINASKESSNsyAIKKKDEVERVAKANR 193
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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