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Conserved domains on  [gi|1064245709|pdb|5LDX|F]
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Chain F, NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13596 PRK13596
NADH-quinone oxidoreductase subunit NuoF;
15-429 0e+00

NADH-quinone oxidoreductase subunit NuoF;


:

Pssm-ID: 237441  Cd Length: 433  Bit Score: 867.36  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        15 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLV 94
Cdd:PRK13596   2 LKDKDRIFTNLYGLQDWSLKGAKKRGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLV 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        95 VNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFD 174
Cdd:PRK13596  82 VNADESEPGTCKDRDILRHDPHKLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFD 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       175 VFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 254
Cdd:PRK13596 162 IYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTK 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       255 LFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALIQAQTGLGTAAV 334
Cdd:PRK13596 242 LFCISGHVNKPCNVEEAMGIPFRELIEKHAGGVRGGWDNLLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAAV 321

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       335 IVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWP 414
Cdd:PRK13596 322 IVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWP 401

                        410
                 ....*....|....*
5LDX_F       415 VQGLIRHFRPELEER 429
Cdd:PRK13596 402 IQGLIRHFRPEIEER 416
 
Name Accession Description Interval E-value
PRK13596 PRK13596
NADH-quinone oxidoreductase subunit NuoF;
15-429 0e+00

NADH-quinone oxidoreductase subunit NuoF;


Pssm-ID: 237441  Cd Length: 433  Bit Score: 867.36  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        15 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLV 94
Cdd:PRK13596   2 LKDKDRIFTNLYGLQDWSLKGAKKRGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLV 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        95 VNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFD 174
Cdd:PRK13596  82 VNADESEPGTCKDRDILRHDPHKLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFD 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       175 VFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 254
Cdd:PRK13596 162 IYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTK 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       255 LFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALIQAQTGLGTAAV 334
Cdd:PRK13596 242 LFCISGHVNKPCNVEEAMGIPFRELIEKHAGGVRGGWDNLLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAAV 321

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       335 IVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWP 414
Cdd:PRK13596 322 IVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWP 401

                        410
                 ....*....|....*
5LDX_F       415 VQGLIRHFRPELEER 429
Cdd:PRK13596 402 IQGLIRHFRPEIEER 416
nuoF_fam TIGR01959
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ...
 20-429 0e+00

NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 131014  Cd Length: 411  Bit Score: 679.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F         20 RIFTNLYGRHDWRLKGAQSRGDWYKTKEILLK-GPDWILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNAD 98
Cdd:TIGR01959   1 VLTTNLDNPESWTLEEYEKRGGYDALRKALEEmSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPKPKYLVCNAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F         99 EGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVV 178
Cdd:TIGR01959  81 ESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVH 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        179 RGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTKLFNI 258
Cdd:TIGR01959 161 RGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        259 SGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWdNLLAVIPGGSSTPLIPKSVCETVLMDFDALIQAQTGLGTAAVIVMD 338
Cdd:TIGR01959 241 SGHVNKPGNYELPLGTPLRELLEDYAGGMRGGW-KLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVMD 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        339 RSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGL 418
Cdd:TIGR01959 320 ESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQSA 399

                         410
                  ....*....|.
5LDX_F        419 IRHFRPELEER 429
Cdd:TIGR01959 400 IKHFRDEFEAH 410
NuoF COG1894
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ...
 21-429 0e+00

NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 441498 [Multi-domain]  Cd Length: 418  Bit Score: 664.40  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       21 IFTNLYGRHDWRLKGAQSRGDWYKTKEILLK-GPDWILGEVKTSGLRGRGGAGFPTGLKWSFMNKpSDGRPKYLVVNADE 99
Cdd:COG1894   7 LLRNCGIIDPESLEDYIARGGYQALRKALTEmTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPK-APGDPKYLVCNADE 85

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F      100 GEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVR 179
Cdd:COG1894  86 GEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDFDIEVHR 165

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F      180 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTKLFNIS 259
Cdd:COG1894 166 GAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGTKLFSLS 245

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F      260 GHVNNPCTVEEEMSVPLKELIEKHAGGVTGGwDNLLAVIPGGSSTPLIPKSvCETVLMDFDALIQAQTGLGTAAVIVMDR 339
Cdd:COG1894 246 GHVKNPGLYEVPMGTTLRELIYDIGGGIRGG-RKLKAVQPGGPSGGCLPAE-HLDTPMDYESLAAAGSMLGSGGMIVMDE 323

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F      340 STDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLI 419
Cdd:COG1894 324 TTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSLCALGDAAPNPVLSTL 403

                       410
                ....*....|
5LDX_F      420 RHFRPELEER 429
Cdd:COG1894 404 KYFRDEFEAH 413
Complex1_51K pfam01512
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
60-229 7.21e-62

Respiratory-chain NADH dehydrogenase 51 Kd subunit;


Pssm-ID: 460237 [Multi-domain]  Cd Length: 150  Bit Score: 197.35  E-value: 7.21e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F         60 VKTSGLRGRGGAGFPTGLKWSFmnkPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIR 139
Cdd:pfam01512   1 VKEAGIVGRGGAGFPTHVKLSP---PPKKKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIR 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        140 GEFYNEASNLQVAIREAYEAGligknacgsgydFDVFVVRGAGAYICGEETALIESIEGKqGKPRLKPpfPADVGVfgcp 219
Cdd:pfam01512  78 DEKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTGR-GVPRGKP--PADVGV---- 138

                         170
                  ....*....|
5LDX_F        220 tTVANVETVA 229
Cdd:pfam01512 139 -VVNNVETLA 147
NADH_4Fe-4S smart00928
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
344-389 4.09e-20

NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;


Pssm-ID: 197996 [Multi-domain]  Cd Length: 46  Bit Score: 82.96  E-value: 4.09e-20
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
5LDX_F         344 VKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEI 389
Cdd:smart00928   1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
 
Name Accession Description Interval E-value
PRK13596 PRK13596
NADH-quinone oxidoreductase subunit NuoF;
15-429 0e+00

NADH-quinone oxidoreductase subunit NuoF;


Pssm-ID: 237441  Cd Length: 433  Bit Score: 867.36  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        15 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLV 94
Cdd:PRK13596   2 LKDKDRIFTNLYGLQDWSLKGAKKRGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLV 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        95 VNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFD 174
Cdd:PRK13596  82 VNADESEPGTCKDRDILRHDPHKLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFD 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       175 VFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 254
Cdd:PRK13596 162 IYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTK 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       255 LFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALIQAQTGLGTAAV 334
Cdd:PRK13596 242 LFCISGHVNKPCNVEEAMGIPFRELIEKHAGGVRGGWDNLLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAAV 321

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       335 IVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWP 414
Cdd:PRK13596 322 IVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWP 401

                        410
                 ....*....|....*
5LDX_F       415 VQGLIRHFRPELEER 429
Cdd:PRK13596 402 IQGLIRHFRPEIEER 416
PTZ00304 PTZ00304
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
 4-430 0e+00

NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional


Pssm-ID: 185547 [Multi-domain]  Cd Length: 461  Bit Score: 844.83  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F         4 TTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFPTGLKWSFMN 83
Cdd:PTZ00304  11 TASLLVRVHGGLKDQDRIFTNLYRDFDTYIDGALKRGDWYRTKDILLKGHDWIIDEIKKSGLRGRGGAGFPSGLKWSFMP 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        84 K-PSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLI 162
Cdd:PTZ00304  91 KvKPDGRPSYLVVNADESEPGTCKDREIMRHDPHKLVEGALLAGFAMRARAAYIYIRGEFYNEARALQQAIDEAYKKGFL 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       163 GKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWF 242
Cdd:PTZ00304 171 GKNACGSGYDFDVYVHRGAGAYICGEETALIESIEGKPGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPQWF 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       243 ASFGRERNSGTKLFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDAL 322
Cdd:PTZ00304 251 ASFGRPNNAGTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLCVIPGGSSVPLIPKEICDNVLMDFDAL 330

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       323 IQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGH 402
Cdd:PTZ00304 331 KEVQSGLGTAAVIVMDKSTDIIDAILRLSKFYKHESCGQCTPCREGTPWLVKMMERFVVGNADKEEIDTLEEVSKQIEGH 410

                        410       420
                 ....*....|....*....|....*...
5LDX_F       403 TICALGDGAAWPVQGLIRHFRPELEERM 430
Cdd:PTZ00304 411 TICALGDAAAWPVQGLIRHFRPEIEERI 438
PLN03132 PLN03132
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
 7-430 0e+00

NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional


Pssm-ID: 178678 [Multi-domain]  Cd Length: 461  Bit Score: 797.54  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F         7 PKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFPTGLKWSFMNKPS 86
Cdd:PLN03132  25 PEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGPDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVS 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        87 DGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNA 166
Cdd:PLN03132 105 DGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAAYIYIRGEYVNERLNLERARHEAYAAGLLGKNA 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       167 CGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFG 246
Cdd:PLN03132 185 CGSGYDFDVYIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFASFG 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       247 RERNSGTKLFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALIQAQ 326
Cdd:PLN03132 265 RKNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKKICDDVLMDFDALKAVQ 344

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       327 TGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICA 406
Cdd:PLN03132 345 SGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWDIMERMKVGNAKLEEIDMLQEVTKQIEGHTICA 424

                        410       420
                 ....*....|....*....|....
5LDX_F       407 LGDGAAWPVQGLIRHFRPELEERM 430
Cdd:PLN03132 425 LGDAAAWPVQGLIRHFRPELERRI 448
nuoF_fam TIGR01959
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ...
 20-429 0e+00

NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 131014  Cd Length: 411  Bit Score: 679.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F         20 RIFTNLYGRHDWRLKGAQSRGDWYKTKEILLK-GPDWILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNAD 98
Cdd:TIGR01959   1 VLTTNLDNPESWTLEEYEKRGGYDALRKALEEmSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPKPKYLVCNAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F         99 EGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVV 178
Cdd:TIGR01959  81 ESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVH 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        179 RGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTKLFNI 258
Cdd:TIGR01959 161 RGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        259 SGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWdNLLAVIPGGSSTPLIPKSVCETVLMDFDALIQAQTGLGTAAVIVMD 338
Cdd:TIGR01959 241 SGHVNKPGNYELPLGTPLRELLEDYAGGMRGGW-KLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVMD 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        339 RSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGL 418
Cdd:TIGR01959 320 ESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQSA 399

                         410
                  ....*....|.
5LDX_F        419 IRHFRPELEER 429
Cdd:TIGR01959 400 IKHFRDEFEAH 410
NuoF COG1894
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ...
 21-429 0e+00

NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 441498 [Multi-domain]  Cd Length: 418  Bit Score: 664.40  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       21 IFTNLYGRHDWRLKGAQSRGDWYKTKEILLK-GPDWILGEVKTSGLRGRGGAGFPTGLKWSFMNKpSDGRPKYLVVNADE 99
Cdd:COG1894   7 LLRNCGIIDPESLEDYIARGGYQALRKALTEmTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPK-APGDPKYLVCNADE 85

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F      100 GEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVR 179
Cdd:COG1894  86 GEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDFDIEVHR 165

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F      180 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTKLFNIS 259
Cdd:COG1894 166 GAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGTKLFSLS 245

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F      260 GHVNNPCTVEEEMSVPLKELIEKHAGGVTGGwDNLLAVIPGGSSTPLIPKSvCETVLMDFDALIQAQTGLGTAAVIVMDR 339
Cdd:COG1894 246 GHVKNPGLYEVPMGTTLRELIYDIGGGIRGG-RKLKAVQPGGPSGGCLPAE-HLDTPMDYESLAAAGSMLGSGGMIVMDE 323

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F      340 STDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLI 419
Cdd:COG1894 324 TTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSLCALGDAAPNPVLSTL 403

                       410
                ....*....|
5LDX_F      420 RHFRPELEER 429
Cdd:COG1894 404 KYFRDEFEAH 413
PRK11278 PRK11278
NADH-quinone oxidoreductase subunit NuoF;
43-427 1.73e-120

NADH-quinone oxidoreductase subunit NuoF;


Pssm-ID: 236891 [Multi-domain]  Cd Length: 448  Bit Score: 358.73  E-value: 1.73e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        43 YKTKEILLKG--PDWILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVE 120
Cdd:PRK11278  36 YEGARKALTGmsPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVE 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       121 GCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQ 200
Cdd:PRK11278 116 GMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRR 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       201 GKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRER--NSGTKLFNISGHVNNPCTVEEEMSVPLKE 278
Cdd:PRK11278 196 ANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKGKskDAGTKLMGFSGRVKNPGLWELPFGTTARE 275

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       279 LIEKHAGGVTGGWdNLLAVIPGGSSTP-LIPKSVceTVLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHE 357
Cdd:PRK11278 276 ILEDYAGGMRDGL-KFKAWQPGGAGTDfLTEAHL--DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEFFARE 352

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
5LDX_F       358 SCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQI-EGHTICALGDGAAWPVQGLIRHFRPELE 427
Cdd:PRK11278 353 SCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLgPGKTFCAHAPGAVEPLQSAIKYFREEFE 423
Complex1_51K pfam01512
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
60-229 7.21e-62

Respiratory-chain NADH dehydrogenase 51 Kd subunit;


Pssm-ID: 460237 [Multi-domain]  Cd Length: 150  Bit Score: 197.35  E-value: 7.21e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F         60 VKTSGLRGRGGAGFPTGLKWSFmnkPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIR 139
Cdd:pfam01512   1 VKEAGIVGRGGAGFPTHVKLSP---PPKKKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIR 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        140 GEFYNEASNLQVAIREAYEAGligknacgsgydFDVFVVRGAGAYICGEETALIESIEGKqGKPRLKPpfPADVGVfgcp 219
Cdd:pfam01512  78 DEKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTGR-GVPRGKP--PADVGV---- 138

                         170
                  ....*....|
5LDX_F        220 tTVANVETVA 229
Cdd:pfam01512 139 -VVNNVETLA 147
NADH_4Fe-4S pfam10589
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
345-429 2.80e-42

NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;


Pssm-ID: 463160 [Multi-domain]  Cd Length: 85  Bit Score: 144.16  E-value: 2.80e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        345 KAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRP 424
Cdd:pfam10589   1 DVARRFLEFYAHESCGKCTPCREGTKWLAEILERIVDGEGTEEDLDLLEELARTIKGRSLCGLGDGAANPVLSALRYFRD 80


                  ....*
5LDX_F        425 ELEER 429
Cdd:pfam10589  81 EFEAH 85
NADH_4Fe-4S smart00928
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
344-389 4.09e-20

NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;


Pssm-ID: 197996 [Multi-domain]  Cd Length: 46  Bit Score: 82.96  E-value: 4.09e-20
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
5LDX_F         344 VKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEI 389
Cdd:smart00928   1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
RnfC COG4656
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and ...
 53-301 1.66e-14

Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase


Pssm-ID: 443694 [Multi-domain]  Cd Length: 451  Bit Score: 75.17  E-value: 1.66e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F       53 PDWILGEVKTSGLRGRGGAGFPTGLKwsfMNKPSDGRPKYLVVNADEGEPG-TCKDReIIRHDPHKLVEGCLVGGRAMGA 131
Cdd:COG4656 121 PEEIIERIREAGIVGLGGAGFPTHVK---LSPPPDKKIDTLIINGAECEPYlTCDDR-LMRERAEEIIEGIRILMKALGA 196

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F      132 RAAYIyirgefyneasnlqvAI----REAYEAgLigKNACGSGYDFDVFVVR---GAGAyicgeETALIESIEGKQ---G 201
Cdd:COG4656 197 KKVII---------------GIednkPEAIAA-L--RKALAGDDDIEVVVLPtkyPQGG-----EKQLIKALTGREvpsG 253

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F      202 KprlkppFPADVGVFgcpttVANVETV-AVSPTICrrggawfasFGR---ERnsgtkLFNISGH-VNNPCTVEEEMSVPL 276
Cdd:COG4656 254 G------LPADVGVV-----VQNVGTAyAIYRAVR---------DGKpliER-----VVTVTGDaVKEPGNLLVRIGTPV 308

                       250       260
                ....*....|....*....|....*
5LDX_F      277 KELIEkHAGGVTggwDNLLAVIPGG 301
Cdd:COG4656 309 SDLLE-QAGGFK---EEPGKLIMGG 329
rnfC TIGR01945
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in ...
 49-301 4.38e-12

electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. [Energy metabolism, Electron transport]


Pssm-ID: 273888 [Multi-domain]  Cd Length: 435  Bit Score: 67.37  E-value: 4.38e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F         49 LLKGPDW-------ILGEVKTSGLRGRGGAGFPTGLKwsfMNKPSDGRPKYLVVNADEGEPG-TCKDReIIRHDPHKLVE 120
Cdd:TIGR01945 110 LEPIPDFenlspeeILEKIRAAGIVGLGGATFPTHVK---LNPPPEKKIETLIINGAECEPYlTCDDR-LMRERAEEIIG 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        121 GCLVGGRAMGARAAYIYIrgefynEASNLqvairEAYEAgliGKNACGsGYDFDVFVVRgaGAYICGEETALIESIEGKQ 200
Cdd:TIGR01945 186 GIRILLKILGVKKVVIGI------EDNKP-----EAIAA---LKKALG-GYNIKVRVLP--TKYPQGGEKQLIYALTGRE 248

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        201 GKPRlkpPFPADVGVfgcptTVANVETV-----AV---SPTICRrggawfasfgrernsgtkLFNISGH-VNNPCTVEEE 271
Cdd:TIGR01945 249 VPSG---GLPADIGV-----VVQNVGTAfaiyeAVvngKPLIER------------------VVTVTGDaIRRPKNLWVL 302

                         250       260       270
                  ....*....|....*....|....*....|
5LDX_F        272 MSVPLKELIEkHAGGVTggwDNLLAVIPGG 301
Cdd:TIGR01945 303 IGTPVSDILA-FCGGFR---EKPERLIMGG 328
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 53-121 8.79e-05

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 44.94  E-value: 8.79e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5LDX_F        53 PDWILGEVKTSGLRGRGGAGFPTGLKWSfmnkPSDGRPKYLVVNADEGEPG-TCKDReIIRHDPHKLVEG 121
Cdd:PRK05035 127 PEELIERIRQAGIAGLGGAGFPTAVKLQ----PGGDKIETLIINGAECEPYiTADDR-LMRERADEIIEG 191
SLBB pfam10531
SLBB domain;
258-305 7.81e-04

SLBB domain;


Pssm-ID: 463136 [Multi-domain]  Cd Length: 56  Bit Score: 37.26  E-value: 7.81e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
5LDX_F        258 ISGHVNNPCTVEEEMSVPLKELIEkHAGGVTGGWDNLLAVI----PGGSSTP 305
Cdd:pfam10531   4 VTGEVKRPGNYEVPIGTTLSDLIE-LAGGFTDDADLDINLRrlkrPGGPMMG 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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