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Conserved domains on  [gi|918453329|pdb|4Y28|I]
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Chain I, Photosystem I reaction center subunit VIII

Protein Classification

photosystem I reaction center subunit VIII( domain architecture ID 10000150)

photosystem I reaction center subunit VIII may help in the organization of the PsaL subunit

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
psaI CHL00186
photosystem I subunit VIII; Validated
 1-28 1.27e-08

photosystem I subunit VIII; Validated


:

Pssm-ID: 177088  Cd Length: 36  Bit Score: 43.42  E-value: 1.27e-08
                        10        20
                ....*....|....*....|....*...
4Y28_I        1 NLPSLFVPLVGLLFPAVAMASLFLHVEK 28
Cdd:CHL00186  5 NLPSILVPLVGLVFPAIAMASLFLYIQK 32
 
Name Accession Description Interval E-value
psaI CHL00186
photosystem I subunit VIII; Validated
 1-28 1.27e-08

photosystem I subunit VIII; Validated


Pssm-ID: 177088  Cd Length: 36  Bit Score: 43.42  E-value: 1.27e-08
                        10        20
                ....*....|....*....|....*...
4Y28_I        1 NLPSLFVPLVGLLFPAVAMASLFLHVEK 28
Cdd:CHL00186  5 NLPSILVPLVGLVFPAIAMASLFLYIQK 32
PS_I_psaI TIGR03052
photosystem I reaction center subunit VIII; Members of this protein family are PsaI, subunit ...
 1-29 6.40e-06

photosystem I reaction center subunit VIII; Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. [Energy metabolism, Photosynthesis]


Pssm-ID: 132096  Cd Length: 31  Bit Score: 36.55  E-value: 6.40e-06
                         10        20
                 ....*....|....*....|....*....
4Y28_I         1 NLPSLFVPLVGLLFPAVAMASLFLHVEKR 29
Cdd:TIGR03052  2 WLPSIFVPLVGLVFPAVFMALLFRYIEAD 30
PSI_8 pfam00796
Photosystem I reaction centre subunit VIII;
3-26 3.93e-04

Photosystem I reaction centre subunit VIII;


Pssm-ID: 425874  Cd Length: 24  Bit Score: 32.14  E-value: 3.93e-04
                         10        20
                 ....*....|....*....|....
4Y28_I         3 PSLFVPLVGLLFPAVAMASLFLHV 26
Cdd:pfam00796  1 PSIFVPLVGLVFPAVAMALLFLYI 24
 
Name Accession Description Interval E-value
psaI CHL00186
photosystem I subunit VIII; Validated
 1-28 1.27e-08

photosystem I subunit VIII; Validated


Pssm-ID: 177088  Cd Length: 36  Bit Score: 43.42  E-value: 1.27e-08
                        10        20
                ....*....|....*....|....*...
4Y28_I        1 NLPSLFVPLVGLLFPAVAMASLFLHVEK 28
Cdd:CHL00186  5 NLPSILVPLVGLVFPAIAMASLFLYIQK 32
PS_I_psaI TIGR03052
photosystem I reaction center subunit VIII; Members of this protein family are PsaI, subunit ...
 1-29 6.40e-06

photosystem I reaction center subunit VIII; Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. [Energy metabolism, Photosynthesis]


Pssm-ID: 132096  Cd Length: 31  Bit Score: 36.55  E-value: 6.40e-06
                         10        20
                 ....*....|....*....|....*....
4Y28_I         1 NLPSLFVPLVGLLFPAVAMASLFLHVEKR 29
Cdd:TIGR03052  2 WLPSIFVPLVGLVFPAVFMALLFRYIEAD 30
psaI PRK11877
photosystem I reaction center subunit VIII; Reviewed
 2-27 1.19e-04

photosystem I reaction center subunit VIII; Reviewed


Pssm-ID: 183355  Cd Length: 38  Bit Score: 33.50  E-value: 1.19e-04
                        10        20
                ....*....|....*....|....*.
4Y28_I        2 LPSLFVPLVGLLFPAVAMASLFLHVE 27
Cdd:PRK11877 10 LPWIFVPLVGWVFPAVFMVLLGRYIT 35
PSI_8 pfam00796
Photosystem I reaction centre subunit VIII;
3-26 3.93e-04

Photosystem I reaction centre subunit VIII;


Pssm-ID: 425874  Cd Length: 24  Bit Score: 32.14  E-value: 3.93e-04
                         10        20
                 ....*....|....*....|....
4Y28_I         3 PSLFVPLVGLLFPAVAMASLFLHV 26
Cdd:pfam00796  1 PSIFVPLVGLVFPAVAMALLFLYI 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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