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Conserved domains on  [gi|268612188|pdb|2WSF|I]
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Chain I, PHOTOSYSTEM I REACTION CENTER SUBUNIT VIII

Protein Classification

photosystem I reaction center subunit VIII( domain architecture ID 10000150)

photosystem I reaction center subunit VIII may help in the organization of the PsaL subunit

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
psaI CHL00186
photosystem I subunit VIII; Validated
 1-30 7.75e-09

photosystem I subunit VIII; Validated


:

Pssm-ID: 177088  Cd Length: 36  Bit Score: 44.58  E-value: 7.75e-09
                        10        20        30
                ....*....|....*....|....*....|
2WSF_I        1 MINLPSLFVPLVGLLFPAVAMASLFLHVEK 30
Cdd:CHL00186  3 ASNLPSILVPLVGLVFPAIAMASLFLYIQK 32
 
Name Accession Description Interval E-value
psaI CHL00186
photosystem I subunit VIII; Validated
 1-30 7.75e-09

photosystem I subunit VIII; Validated


Pssm-ID: 177088  Cd Length: 36  Bit Score: 44.58  E-value: 7.75e-09
                        10        20        30
                ....*....|....*....|....*....|
2WSF_I        1 MINLPSLFVPLVGLLFPAVAMASLFLHVEK 30
Cdd:CHL00186  3 ASNLPSILVPLVGLVFPAIAMASLFLYIQK 32
PS_I_psaI TIGR03052
photosystem I reaction center subunit VIII; Members of this protein family are PsaI, subunit ...
 2-31 1.45e-06

photosystem I reaction center subunit VIII; Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. [Energy metabolism, Photosynthesis]


Pssm-ID: 132096  Cd Length: 31  Bit Score: 38.86  E-value: 1.45e-06
                         10        20        30
                 ....*....|....*....|....*....|
2WSF_I         2 INLPSLFVPLVGLLFPAVAMASLFLHVEKR 31
Cdd:TIGR03052  1 AWLPSIFVPLVGLVFPAVFMALLFRYIEAD 30
PSI_8 pfam00796
Photosystem I reaction centre subunit VIII;
5-28 8.35e-05

Photosystem I reaction centre subunit VIII;


Pssm-ID: 425874  Cd Length: 24  Bit Score: 34.06  E-value: 8.35e-05
                         10        20
                 ....*....|....*....|....
2WSF_I         5 PSLFVPLVGLLFPAVAMASLFLHV 28
Cdd:pfam00796  1 PSIFVPLVGLVFPAVAMALLFLYI 24
 
Name Accession Description Interval E-value
psaI CHL00186
photosystem I subunit VIII; Validated
 1-30 7.75e-09

photosystem I subunit VIII; Validated


Pssm-ID: 177088  Cd Length: 36  Bit Score: 44.58  E-value: 7.75e-09
                        10        20        30
                ....*....|....*....|....*....|
2WSF_I        1 MINLPSLFVPLVGLLFPAVAMASLFLHVEK 30
Cdd:CHL00186  3 ASNLPSILVPLVGLVFPAIAMASLFLYIQK 32
PS_I_psaI TIGR03052
photosystem I reaction center subunit VIII; Members of this protein family are PsaI, subunit ...
 2-31 1.45e-06

photosystem I reaction center subunit VIII; Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. [Energy metabolism, Photosynthesis]


Pssm-ID: 132096  Cd Length: 31  Bit Score: 38.86  E-value: 1.45e-06
                         10        20        30
                 ....*....|....*....|....*....|
2WSF_I         2 INLPSLFVPLVGLLFPAVAMASLFLHVEKR 31
Cdd:TIGR03052  1 AWLPSIFVPLVGLVFPAVFMALLFRYIEAD 30
psaI PRK11877
photosystem I reaction center subunit VIII; Reviewed
 4-29 6.95e-05

photosystem I reaction center subunit VIII; Reviewed


Pssm-ID: 183355  Cd Length: 38  Bit Score: 34.65  E-value: 6.95e-05
                        10        20
                ....*....|....*....|....*.
2WSF_I        4 LPSLFVPLVGLLFPAVAMASLFLHVE 29
Cdd:PRK11877 10 LPWIFVPLVGWVFPAVFMVLLGRYIT 35
PSI_8 pfam00796
Photosystem I reaction centre subunit VIII;
5-28 8.35e-05

Photosystem I reaction centre subunit VIII;


Pssm-ID: 425874  Cd Length: 24  Bit Score: 34.06  E-value: 8.35e-05
                         10        20
                 ....*....|....*....|....
2WSF_I         5 PSLFVPLVGLLFPAVAMASLFLHV 28
Cdd:pfam00796  1 PSIFVPLVGLVFPAVAMALLFLYI 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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