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Conserved domains on  [gi|268612196|pdb|2WSF|3]
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Chain 3, LHCA3

Protein Classification

PLN00048 family protein( domain architecture ID 11476354)

PLN00048 family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
13-276 2.87e-173

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


:

Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 478.58  E-value: 2.87e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        13 TFSAEAARQSLGPRSLQSPFgfSRKASFLVKAAATPPVKQGSDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGG 92
Cdd:PLN00048   1 TSGVQTARRALSSSAARSSS--AKKARFVVRAEATPPAKQGADRQLWFASKQSLSYLDGTLPGDFGFDPLGLSDPEGAGG 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        93 FIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHR 172
Cdd:PLN00048  79 FIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHR 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       173 RFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVG 252
Cdd:PLN00048 159 RAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVG 238
                        250       260
                 ....*....|....*....|....
2WSF_3       253 PYQNLLDHLTDPVHNNILTSLKFH 276
Cdd:PLN00048 239 PFQNLLDHLADPVNNNVLTNLKFH 262
 
Name Accession Description Interval E-value
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
13-276 2.87e-173

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 478.58  E-value: 2.87e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        13 TFSAEAARQSLGPRSLQSPFgfSRKASFLVKAAATPPVKQGSDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGG 92
Cdd:PLN00048   1 TSGVQTARRALSSSAARSSS--AKKARFVVRAEATPPAKQGADRQLWFASKQSLSYLDGTLPGDFGFDPLGLSDPEGAGG 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        93 FIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHR 172
Cdd:PLN00048  79 FIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHR 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       173 RFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVG 252
Cdd:PLN00048 159 RAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVG 238
                        250       260
                 ....*....|....*....|....
2WSF_3       253 PYQNLLDHLTDPVHNNILTSLKFH 276
Cdd:PLN00048 239 PFQNLLDHLADPVNNNVLTNLKFH 262
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
67-247 1.18e-54

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 174.03  E-value: 1.18e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3         67 SYLDGSLPGDYGFDPLGLSDPEGTggfiePKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQEtalPWFRTGFIPPa 146
Cdd:pfam00504   3 AYLDGSLPGDYGFDPLGLSADPET-----FKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEP---VWFEAGAVAL- 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        147 gtynYWADSYTLFV-FEMALMGFAEHRRFQDWAKPGsmgkqyflglekgLGGSGEPAYPGGPFFNPLGF-GKDEKSLKDL 224
Cdd:pfam00504  74 ----HAQSVPTLLAlQILLLMGFLELARWQGGKAPG-------------LGGGGDRGYPGGFGFDPLGLaKKDPETLAEL 136
                         170       180
                  ....*....|....*....|...
2WSF_3        225 KLKEVKNGRLAMLAILGYFVQAL 247
Cdd:pfam00504 137 KLKELKNGRLAMIAFLGFFVQEL 159
LHCA5 COG5743
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
95-131 4.16e-04

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 37.61  E-value: 4.16e-04
                        10        20        30
                ....*....|....*....|....*....|....*....
2WSF_3       95 EPK--WLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQ 131
Cdd:COG5743  20 EPRfgFTPYAERLNGRLAMIGFVALLLIELLTGQGFLHW 58
 
Name Accession Description Interval E-value
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
13-276 2.87e-173

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 478.58  E-value: 2.87e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        13 TFSAEAARQSLGPRSLQSPFgfSRKASFLVKAAATPPVKQGSDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGG 92
Cdd:PLN00048   1 TSGVQTARRALSSSAARSSS--AKKARFVVRAEATPPAKQGADRQLWFASKQSLSYLDGTLPGDFGFDPLGLSDPEGAGG 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        93 FIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHR 172
Cdd:PLN00048  79 FIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHR 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       173 RFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVG 252
Cdd:PLN00048 159 RAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVG 238
                        250       260
                 ....*....|....*....|....
2WSF_3       253 PYQNLLDHLTDPVHNNILTSLKFH 276
Cdd:PLN00048 239 PFQNLLDHLADPVNNNVLTNLKFH 262
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
26-273 2.17e-72

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 222.45  E-value: 2.17e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        26 RSLQSPFGFSRKASFLVKAAAtppvkQGSDRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTggfiepKWLAYGEI 104
Cdd:PLN00147  20 SSHCTRSISSVAASSGGINPV-----VAQERPTWLPGLDPPPHLDGTLAGDFGFDPLGLgEDPESL------KWYVQAEL 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       105 INGRYAMLGAVGAIAPEILGKAGLipqeTALP-WFRTGfippAGTYNYwADSYTLFVFEMALMGFAEHRRFQDWAKPGSM 183
Cdd:PLN00147  89 VHSRFAMAGVAGILFTDLLRVTGI----RNLPvWYEAG----AVKFEF-ASTRTLFVVQLLLMGFAETKRYMDFVSPGSQ 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       184 GKQ-YFLGLEKGLGGSgEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLT 262
Cdd:PLN00147 160 AKEgSFFGLEAALEGL-EPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLS 238
                        250
                 ....*....|.
2WSF_3       263 DPVHNNILTSL 273
Cdd:PLN00147 239 DPWHKTIIQTL 249
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
31-270 1.78e-62

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 196.77  E-value: 1.78e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        31 PFGFSRKASFLVKAAAtppVKQGSDRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTggfiepKWLAYGEIINGRY 109
Cdd:PLN00097  22 PRGVASKARASRGPGA---VAAAADRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGaDPEML------KWFVQAELMHARW 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       110 AMLGAVGAIAPEILGKAGLipqeTALP-WFrtgfipPAGTYN-YWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQY 187
Cdd:PLN00097  93 AMLGLAGCVAPELLTKIGM----ADLPnWI------DAAKWDgYWAGAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDP 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       188 FLGLEKGlGGSGEPAYPGGpFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHN 267
Cdd:PLN00097 163 LFGANKG-DTNTDVGYPKG-LFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHN 240

                 ...
2WSF_3       268 NIL 270
Cdd:PLN00097 241 GIF 243
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
53-276 5.81e-55

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 178.57  E-value: 5.81e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        53 GSDRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTggfiepKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQ 131
Cdd:PLN00098  59 PPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLgSDPELL------KWFAQAELMHSRWAMLAVAGILIPECLERLGFIEN 132
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       132 etaLPWFrtgfipPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSmgkqyfLGLEKGLGGSGEP----AYPGGP 207
Cdd:PLN00098 133 ---FSWY------DAGAREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGC------VDIEPKLPNKTNPkpdvGYPGGL 197
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       208 FFNPLGFGK-DEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKFH 276
Cdd:PLN00098 198 WFDPMMWGRgSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTSH 267
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
67-247 1.18e-54

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 174.03  E-value: 1.18e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3         67 SYLDGSLPGDYGFDPLGLSDPEGTggfiePKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQEtalPWFRTGFIPPa 146
Cdd:pfam00504   3 AYLDGSLPGDYGFDPLGLSADPET-----FKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEP---VWFEAGAVAL- 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        147 gtynYWADSYTLFV-FEMALMGFAEHRRFQDWAKPGsmgkqyflglekgLGGSGEPAYPGGPFFNPLGF-GKDEKSLKDL 224
Cdd:pfam00504  74 ----HAQSVPTLLAlQILLLMGFLELARWQGGKAPG-------------LGGGGDRGYPGGFGFDPLGLaKKDPETLAEL 136
                         170       180
                  ....*....|....*....|...
2WSF_3        225 KLKEVKNGRLAMLAILGYFVQAL 247
Cdd:pfam00504 137 KLKELKNGRLAMIAFLGFFVQEL 159
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
13-274 3.49e-54

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 175.87  E-value: 3.49e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        13 TFSAEAARQSLGPRSLQSPFgFSRKASFLVKAAATPPVKQGSDRPL--------WFASKQSLSYLDGSLPGDYGFDPLGL 84
Cdd:PLN00101   3 TVTTQASAAVFRPCSSKSRF-LSGSSSKLNRELSFKPMPSSATRSFkveakkgeWLPGLASPGYLNGSLPGDNGFDPLGL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        85 S-DPEGTggfiepKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIpqeTALPWFrtgfipPAGTYNYWADSYTLFVFEM 163
Cdd:PLN00101  82 AeDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII---NAPQWY------DAGKAEYFASSSTLFVIEF 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       164 ALMGFAEHRRFQDWAKPGSMG-----KQYFLGlekglggSGEPAYPGGpFFNPLGFGKDEKSlkdlKLKEVKNGRLAMLA 238
Cdd:PLN00101 147 ILFHYVEIRRWQDIKNPGSVNqdpifKQYSLP-------PNEVGYPGG-IFNPLNFAPTEEA----KEKELANGRLAMLA 214
                        250       260       270
                 ....*....|....*....|....*....|....*.
2WSF_3       239 ILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLK 274
Cdd:PLN00101 215 FLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
7-268 4.43e-50

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 165.69  E-value: 4.43e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3         7 VSSSSLTFSAEAARqsLGPRSLQSPFGFSRKAsfLVKAAATPPVKQ----GSDRPLWFA--SKQSLSYLDGSLPGDYGFD 80
Cdd:PLN00025   2 MALSSTAFAGQAAL--KPPNELSRKVGNGRVT--MRKTVAKAAGSGsiwyGPDRPKYLGpfSGETPSYLTGEFPGDYGWD 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        81 PLGLS-DPEGtggFIEPKWLaygEIINGRYAMLGAVGAIAPEILGKAGLIPQETAlpWFRTGF-IPPAGTYNYW------ 152
Cdd:PLN00025  78 TAGLSaDPET---FARNREL---EVIHARWAMLGALGCVTPELLAKNGVKFGEAV--WFKAGAqIFSEGGLDYLgnpslv 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       153 -ADS-YTLFVFEMALMGFAEHRRFQDwakpgsmgkqyflgleKGLGGSGEPAYPGGPFfNPLGFGKDEKSLKDLKLKEVK 230
Cdd:PLN00025 150 hAQSiLAIWACQVVLMGAVEGYRVNG----------------GPLGEGLDPLYPGGSF-DPLGLADDPDTFAELKVKEIK 212
                        250       260       270
                 ....*....|....*....|....*....|....*...
2WSF_3       231 NGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNN 268
Cdd:PLN00025 213 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANN 250
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
53-275 3.41e-44

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 152.26  E-value: 3.41e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        53 GSDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEpkwlayGEIINGRYAMLGAVGAIAPEILGKAGLI 129
Cdd:PLN00171 105 GEERPRWLGpiPYDYPDHLTGELPGDYGFDIAGLGkDPVAFDKYFN------FEILHARWAMLAALGVVIPEVLDLFGAV 178
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       130 pqETALP-WFRTGFIPPAG-TYNY-------WADSYTLFVF---EMALMGFAEHRRFqdwakpgsmgkqyfLGLEK---- 193
Cdd:PLN00171 179 --HFAEPvWWRVGYAKLQGdTLDYlgipglhIAGSQGVIVIaicQALLMVGPEYARY--------------CGIEAlepl 242
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       194 GLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSL 273
Cdd:PLN00171 243 GIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322

                 ..
2WSF_3       274 KF 275
Cdd:PLN00171 323 KL 324
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
28-272 7.74e-40

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 138.86  E-value: 7.74e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        28 LQSPFGFSRKASFLVKAAATPPVKQ--GSDRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTggfiepKWLAYGEI 104
Cdd:PLN00100   5 TTASAGANRVRVSAGVSTTRRPRVRvaARARPMWYPGATAPKYLDGTMAGDYGFDPLRLgANPETL------PYLQEAEL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       105 INGRYAMLGAVGAIAPEILGkaglipqetaLPWFRTgfippAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMG 184
Cdd:PLN00100  79 MNGRWAMAATAGILFTDAVG----------LPKFWE-----AGAEKYGLDLQTLVLIQVVVMAVLEAARYRGFMKTGESG 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       185 kqyFLGlekglggsgepAYPggpfFNPLGFGKDEKslkdlKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDP 264
Cdd:PLN00100 144 ---VLS-----------FFP----FDPTGMDSPEM-----KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANP 200

                 ....*...
2WSF_3       265 VHNNILTS 272
Cdd:PLN00100 201 GHVNIFTS 208
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
28-273 1.41e-39

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 139.15  E-value: 1.41e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        28 LQSPFGFSRKASFLVKAAATPPvKQGSDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP-------------------- 87
Cdd:PLN00187  25 IVARFGFGKKKKAAKKAKKKSS-KVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPaeylqfdldsldqnlaknla 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        88 -EGTGGFIEPKWLA----------YG-------EIINGRYAMLGAVGAIAPEILgkaglipqeTALPWFRTGFIPPAGTY 149
Cdd:PLN00187 104 gDVIGTRTEASEIKstpfqpysevFGlqrfrecELIHGRWAMLATLGALSVEAL---------TGVTWQDAGKVELVDGS 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       150 NYWADSY-----TLFVFEMALMGFAEhrrFQDWAKpgsmgkqyfLGLEKGLggsgepaYPGGPFFNPLGFGKDEKSLKDL 224
Cdd:PLN00187 175 SYLGQPLpfsitTLIWIEVLVIGYIE---FQRNAE---------LDPEKRL-------YPGGKFFDPLGLAADPEKKETL 235
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
2WSF_3       225 KLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSL 273
Cdd:PLN00187 236 QLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 284
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
35-269 9.59e-39

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 135.93  E-value: 9.59e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        35 SRKASFlvkAAATP-PVKQGSDRPL----WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEpkwlayGEIINGR 108
Cdd:PLN00099  21 SSKSKF---ASSVPlPNANGSSRVTmsadWMPGQPRPPYLDGSAPGDFGFDPLRLGEvPENLERYKE------SELIHCR 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       109 YAMLGAVGAIAPEILGKAGLIpqeTALPWFRTgfipPAGTYNY------WADSYTLFVFEMALMGFAEHRRfqdwakpgS 182
Cdd:PLN00099  92 WAMLAVPGILVPEALGLGNWV---KAQEWAAI----PGGQATYlgnpvpWGTLPTILAIEFLAIAFVEHQR--------S 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       183 MGKQyflglekglggSGEPAYPGGPFfNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFV-QALVTGVGPYQNLLDHL 261
Cdd:PLN00099 157 MEKD-----------PEKKKYPGGAF-DPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVqQSAYPGTGPLENLATHL 224

                 ....*...
2WSF_3       262 TDPVHNNI 269
Cdd:PLN00099 225 ADPWHNNI 232
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
11-246 2.23e-25

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 101.16  E-value: 2.23e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        11 SLTFSAEAARQSLGPRSLqspfgFSRKASFLVKAAATPPVKQGSD--RPLWfaskqslsyLDGSLPGDYGFDPLGL-SDP 87
Cdd:PLN00170  24 SLALLVGTGAAKVGARTL-----LVVAAAAQPKKSWIPAVKGGGNlvDPEW---------LDGSLPGDYGFDPLGLgKDP 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        88 egtgGFIepKWLAYGEIINGRYAMLGAVGAiapeILGKAGlipqeTALPWFRTGFIPPA-GTYNYWadsyTLFVFEMALM 166
Cdd:PLN00170  90 ----AFL--KWYREAELIHGRWAMAAVVGI----FVGQAW-----SGIPWFEAGADPGAiAPFSFG----SLLGTQLLLM 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       167 GFAEHRRFQDWAKPGSMGKQYFL----GLEKGLGGSGEPAYPGGPFFNPLGFG---------KDEKSLKDLKLKEVKNGR 233
Cdd:PLN00170 151 GWVESKRWVDFFNPDSQSVEWATpwsrTAENFANATGLQGYPGGKFFDPLGLAgtvkdgvyiPDFEKLERLKLAEIKHAR 230
                        250
                 ....*....|...
2WSF_3       234 LAMLAILGYFVQA 246
Cdd:PLN00170 231 LAMVAMLIFYFEA 243
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
206-252 1.00e-08

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 53.08  E-value: 1.00e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
2WSF_3        206 GPF-FNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVG 252
Cdd:pfam00504  11 GDYgFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLG 58
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
38-254 2.36e-08

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 53.15  E-value: 2.36e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3        38 ASFLVKAAATPPVKQGSDRP--------------LWFASKQslsYLDGSLPGDYGFDPLGLSDPegtggfIEP--KWLAY 101
Cdd:PLN00089   7 AALCASAAAAAPAQKSRTRPatptaaaeddcpgaIGFAAKE---FMFIGKTGSKKFDPLGLAEK------VEEflPWFRE 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       102 GEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWF---RTGFIPPAGTYNY--WADSYTLFVFEMALMGFAEHRRfqd 176
Cdd:PLN00089  78 SELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTidaHDALLKSGAMIQIfaWIGFVDLAVSAPAAAAAAEFDR--- 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WSF_3       177 waKPGSMGkqyflglekglggsgepaypggpfFNPLG-FGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVG-PY 254
Cdd:PLN00089 155 --TPGDFG------------------------FDLLAlYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGfPY 208
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
60-122 1.72e-05

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 43.83  E-value: 1.72e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
2WSF_3         60 FASKQSLSYLDGSLPGDYGFDPLGLS--DPEGTggfiepKWLAYGEIINGRYAMLGAVGAIAPEI 122
Cdd:pfam00504 101 GKAPGLGGGGDRGYPGGFGFDPLGLAkkDPETL------AELKLKELKNGRLAMIAFLGFFVQEL 159
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
208-246 1.79e-05

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 44.73  E-value: 1.79e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
2WSF_3       208 FFNPLGF--GKDEKSLKDLKLKEVKNGRLAMLAILGYFVQA 246
Cdd:PLN00120  46 FFDPLGLvdDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTE 86
LHCA5 COG5743
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
95-131 4.16e-04

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 37.61  E-value: 4.16e-04
                        10        20        30
                ....*....|....*....|....*....|....*....
2WSF_3       95 EPK--WLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQ 131
Cdd:COG5743  20 EPRfgFTPYAERLNGRLAMIGFVALLLIELLTGQGFLHW 58
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
178-251 1.04e-03

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 39.53  E-value: 1.04e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
2WSF_3       178 AKPGSMGKQYFLGLEKGLGGSGEPAY-----PGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGV 251
Cdd:PLN00170  44 VAAAAQPKKSWIPAVKGGGNLVDPEWldgslPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 122
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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