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Conserved domains on  [gi|28373715|pdb|1ML5|T]
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Chain T, 30S RIBOSOMAL PROTEIN S17

Protein Classification

uS17 family ribosomal protein( domain architecture ID 10000695)

uS17 family ribosomal protein such as prokaryotic 30S ribosomal protein S17 which is part of the small ribosomal subunit (30S), and fungal mitochondrial 37S ribosomal protein S17 which is part of the mitochondrial small ribosomal subunit (37S)

Gene Ontology:  GO:0015935|GO:0005840|GO:0019843
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
 1-82 4.07e-41

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 439956  Cd Length: 87  Bit Score: 130.24  E-value: 4.07e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ML5_T        1 MPKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESG 80
Cdd:COG0186   6 VRRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHDENNECKVGDTVRIMETRPLSKTKRWRVVEIVEKA 85


                ..
1ML5_T       81 RM 82
Cdd:COG0186  86 KE 87
 
Name Accession Description Interval E-value
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
 1-82 4.07e-41

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439956  Cd Length: 87  Bit Score: 130.24  E-value: 4.07e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ML5_T        1 MPKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESG 80
Cdd:COG0186   6 VRRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHDENNECKVGDTVRIMETRPLSKTKRWRVVEIVEKA 85


                ..
1ML5_T       81 RM 82
Cdd:COG0186  86 KE 87
rpsQ PRK05610
30S ribosomal protein S17; Reviewed
 1-81 1.48e-40

30S ribosomal protein S17; Reviewed


Pssm-ID: 235532  Cd Length: 84  Bit Score: 128.73  E-value: 1.48e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ML5_T         1 MPKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESG 80
Cdd:PRK05610   4 MPRKTLQGRVVSDKMDKTIVVLVERRVKHPLYGKIVKRSKKYHAHDENNEAKIGDVVRIMETRPLSKTKRWRLVEIVEKA 83


                 .
1ML5_T        81 R 81
Cdd:PRK05610  84 V 84
uS17_bact TIGR03635
ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small ...
 3-73 1.88e-36

ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274691  Cd Length: 72  Bit Score: 118.03  E-value: 1.88e-36
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
1ML5_T          3 KKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRV 73
Cdd:TIGR03635   1 RKTLQGVVVSDKMDKTVVVLVERRVKHPLYKKIVKRTKKYHAHDENNECKVGDVVRIIETRPLSKTKRWRL 71
Ribosomal_uS17 cd00364
Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins ...
 4-75 4.26e-35

Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.


Pssm-ID: 466775  Cd Length: 73  Bit Score: 114.83  E-value: 4.26e-35
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
1ML5_T        4 KVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLR 75
Cdd:cd00364   1 KILIGVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDEPNECKVGDIVRIGECRPLSKTKRWVVVE 72
Ribosomal_S17 pfam00366
Ribosomal protein S17;
8-75 1.75e-34

Ribosomal protein S17;


Pssm-ID: 459784  Cd Length: 68  Bit Score: 112.87  E-value: 1.75e-34
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
1ML5_T          8 GVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLR 75
Cdd:pfam00366   1 GVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDENNECKVGDVVRIGECRPLSKTKRWVVVE 68
 
Name Accession Description Interval E-value
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
 1-82 4.07e-41

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439956  Cd Length: 87  Bit Score: 130.24  E-value: 4.07e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ML5_T        1 MPKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESG 80
Cdd:COG0186   6 VRRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHDENNECKVGDTVRIMETRPLSKTKRWRVVEIVEKA 85


                ..
1ML5_T       81 RM 82
Cdd:COG0186  86 KE 87
rpsQ PRK05610
30S ribosomal protein S17; Reviewed
 1-81 1.48e-40

30S ribosomal protein S17; Reviewed


Pssm-ID: 235532  Cd Length: 84  Bit Score: 128.73  E-value: 1.48e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ML5_T         1 MPKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESG 80
Cdd:PRK05610   4 MPRKTLQGRVVSDKMDKTIVVLVERRVKHPLYGKIVKRSKKYHAHDENNEAKIGDVVRIMETRPLSKTKRWRLVEIVEKA 83


                 .
1ML5_T        81 R 81
Cdd:PRK05610  84 V 84
uS17_bact TIGR03635
ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small ...
 3-73 1.88e-36

ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274691  Cd Length: 72  Bit Score: 118.03  E-value: 1.88e-36
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
1ML5_T          3 KKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRV 73
Cdd:TIGR03635   1 RKTLQGVVVSDKMDKTVVVLVERRVKHPLYKKIVKRTKKYHAHDENNECKVGDVVRIIETRPLSKTKRWRL 71
Ribosomal_uS17 cd00364
Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins ...
 4-75 4.26e-35

Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.


Pssm-ID: 466775  Cd Length: 73  Bit Score: 114.83  E-value: 4.26e-35
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
1ML5_T        4 KVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLR 75
Cdd:cd00364   1 KILIGVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDEPNECKVGDIVRIGECRPLSKTKRWVVVE 72
Ribosomal_S17 pfam00366
Ribosomal protein S17;
8-75 1.75e-34

Ribosomal protein S17;


Pssm-ID: 459784  Cd Length: 68  Bit Score: 112.87  E-value: 1.75e-34
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
1ML5_T          8 GVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLR 75
Cdd:pfam00366   1 GVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDENNECKVGDVVRIGECRPLSKTKRWVVVE 68
rps17 CHL00142
ribosomal protein S17; Validated
 1-70 9.31e-29

ribosomal protein S17; Validated


Pssm-ID: 177064  Cd Length: 84  Bit Score: 98.96  E-value: 9.31e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ML5_T         1 MPKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKR 70
Cdd:CHL00142   1 MPVKEKIGIVVSNKMNKTIVVAVENRYKHPIYGKIITKTKKYLVHDEENECNIGDQVLIEETRPLSKTKR 70
rps17p PRK08572
30S ribosomal protein S17P; Reviewed
 4-78 1.57e-14

30S ribosomal protein S17P; Reviewed


Pssm-ID: 236296 [Multi-domain]  Cd Length: 108  Bit Score: 63.78  E-value: 1.57e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
1ML5_T         4 KVLTGVVVSDKMQKTVTvlVERQFPH--PLYGKVIKRSKKYLAHDPE-EKYKLGDVVEIIESRPISKRKRFRVLRLVE 78
Cdd:PRK08572  30 QVLEGTVVSDKMHKTVV--VEREYLHyvPKYERYEKRRSRIHAHNPPcIDAKVGDKVKIAECRPLSKTKSFVVVEKKE 105
PTZ00241 PTZ00241
40S ribosomal protein S11; Provisional
 4-87 1.06e-06

40S ribosomal protein S11; Provisional


Pssm-ID: 240326 [Multi-domain]  Cd Length: 158  Bit Score: 44.31  E-value: 1.06e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1ML5_T         4 KVLTGVVVSDKMQKTVtvLVERQFPH--PLYGKVIKRSKKYLAH-DPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESG 80
Cdd:PTZ00241  69 RILRGVVISTKMKRTI--IIRRDYLHyvKKYNRYEKRHKNIPVHcSPCFDVKEGDIVVVGQCRPLSKTVRFNVLKVEKNE 146


                 ....*..
1ML5_T        81 RMDLVEK 87
Cdd:PTZ00241 147 IIGNVRK 153
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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