2HDP,2VJE,2VJE


Conserved Protein Domain Family
mRING-HC-C2H2C4_MDM2-like

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cd16646: mRING-HC-C2H2C4_MDM2-like 
Click on image for an interactive view with Cn3D
Modified RING finger, HC subclass (C2H2C4-type), found in E3 ubiquitin-protein ligase MDM2, protein MDM4 and similar proteins
MDM2 (also known as HDM2) and MDM4 (also known as MDMX or HDMX) are the primary p53 tumor suppressor negative regulators. They have non-redundant roles in the regulation of p53. MDM2 mainly functions to control p53 stability, while MDM4 controls p53 transcriptional activity. Both MDM2 and MDM4 contain an N-terminal p53-binding domain, a RanBP2-type zinc finger (zf-RanBP2) domain near the central acidic region, and a C-terminal modified C2H2C4-type RING-HC finger. Mdm2 can form homo-oligomers through its RING domain and displays E3 ubiquitin ligase activity that catalyzes the attachment of ubiquitin to p53 as an essential step in the regulation of its levels in cells. Despite its RING domain and structural similarity with MDM2, MDM4 does not homo-oligomerize and lacks ubiquitin-ligase function, but inhibits the transcriptional activity of p53. In addition, both their RING domains are responsible for the hetero-oligomerization, which is crucial for the suppression of P53 activity during embryonic development and the recruitment of E2 ubiquitin-conjugating enzymes. Moreover, MDM2 and MDM4 can be phosphorylated and destabilized in response to DNA damage stress. In response to ribosomal stress, MDM2-mediated p53 ubiquitination and degradation can be inhibited through the interaction with ribosomal proteins L5, L11, and L23. However, MDM4 is not bound to ribosomal proteins, suggesting its different response to regulation by small basic proteins such as ribosomal proteins and ARF.
Statistics
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PSSM-Id: 438308
Aligned: 19 rows
Threshold Bit Score: 70.434
Created: 17-May-2013
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding sitedimer interface
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C H H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:2HDP; Homo sapiens MDM2 (also known as Hdm2) binds two Zn2+ ions through its C2H2C4-type RING finger.
    View structure with Cn3D
  • Comment:modified RING-HC finger (C2H2C4-type)
  • Comment:The third conserved zinc-binding residue, cysteine, is replaced by histidine in this family.
  • Comment:consensus of the typical C3HC4-type RING-HC finger: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #  #          #          #   #  #           #  #         
2HDP_A          8 EPCVICQGRPKNGCIVHGKTG------HLMACFTCAKKLKKrn-kPCPVCRQPIQMIVL 59   human
2VJE_A          9 EPCVICQGRPKNGCIVHGKTG------HLMACFTCAKKLKKrn-kPCPVCRQPIQMIVL 60   human
2VJE_B          8 KPCSLCEKRPRDGNIIHGRTG------HLVTCFHCARRLKKag-aSCPICKKEIQLVIK 59   human
EEC20009      393 DPCSMCLVRPRTAILGHGKTS------HRFGCYRCSRKLLQqn-kRCPICRRHIDRVYH 444  black-legged tick
EFN55584      532 SVCVFCMDAAATAGVLHGESV------HRCLCRECAVHLKEsnvqLCPMCRDPVEAYIM 584  Chlorella variabilis
CBY22380      227 DVCILCRENDRTHAFLHGSLEsddasaHLVACEQCALKWQWat-kGCPFCRKPCVNILR 284  Oikopleura dioica
EFX74110      260 DLCGLCGLRPVDGAFMHGNTG------HQLYCYSCSKRVWRqr-kKCPMCRRTIGKVVK 311  common water flea
AEW46992      437 GPCLICGVRPRTGNIIHRKMG------HLVACYTCAKSLYKrk-mPCPVCVQPIIMVIQ 488  elephant shark
EKX40991     1051 ELCVVCLDRPRNVIIVHGNEEkt---lHKVTCSQCTQRIREag-gPCPMCRQPIFDVLE 1105 Guillardia theta CCMP2712
XP_013906474 1141 DTCVICLEAPSEVVFLHESFA------HRCACRGCAEGLATg--aPCPLCDAAATAVLR 1191

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