2CPF


Conserved Protein Domain Family
RRM5_RBM19_like

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cd12318: RRM5_RBM19_like 
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RNA recognition motif 5 (RRM5) found in RNA-binding protein 19 (RBM19 or RBD-1) and similar proteins
This subfamily corresponds to the RRM5 of RBM19 and RRM4 of MRD1. RBM19, also termed RNA-binding domain-1 (RBD-1), is a nucleolar protein conserved in eukaryotes involved in ribosome biogenesis by processing rRNA and is essential for preimplantation development. It has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains).
Statistics
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PSSM-Id: 409757
Aligned: 24 rows
Threshold Bit Score: 96.9122
Created: 13-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2CPF_A          6 SGLFIKNLNFsTTEETLKGVFSkvg-----aikSCTISKKKNKagvl--------lsmGFGFVEYKKpEQAQKALKQLqg 72   house mouse
XP_002953091  547 GTIYVKNLAFsTGDTPLRKHFEaavaaaggslhSALVARKKVPgtgkdggggtavqslGYGFVEVDSeAVAAAVIKKLqg 626  Volvox carter...
NP_193696     602 NVLNVKNLSFkTTDEGLKKHFTklvkq--gkilSVTIIKHKKNeky---------lssGYGFVEFDSvETATSVYRDLqg 670  thale cress
EFN59300      350 SSIFVKNLAWaTEDAALKAHFDaavsaaggavrAVKVAKRKGPdgkl--------lsaGFGFVECSSdAAAKAAVKALqg 421  Chlorella var...
CBK19970      446 TTIYIKNLNWkTTEAAVRKLFNsvp-----glkSITLPKKKTPsges--------lpmGFGFAVYETrAQALRALNQLsg 512  Blastocystis ...
EDQ91767      902 SSVFVKNLHFdTDEDALRHHFEgig-----pirSVRVARKPNPkepsr------plsmGFGFVEYKSrQDAVRAIKMLhg 970  Monosiga brev...
EGZ26394      550 HTICVKNLNFtTKEAALEKIFErcg-----klrKVTVARRKDPkrgm--------lsmGFGFVEYVDaKHTERALQTLqn 616  Phytophthora ...
XP_655058     504 KTLYVKNISFkTKEDVIRKVFEkcg-----rvlAITLSKTKDKkve---------knsGFGFVEYAKhEDAINAIKTLqg 569  Entamoeba his...
EEA08353      600 TCIFIKGLNFkTSEDCLLKIFGnin-----gfrKSTIIKKTVNkddnq-----iklsmGYGFLEFDTiENARECIKKMqg 669  Cryptosporidi...
EAS00521      541 KILYIKNLSFnTTESTLQSLFEkakv---gtirSVKIVKNKGQs-------------qGYGFVEFSDhEAVIKSIKKLqn 604  Tetrahymena t...
2CPF_A         73 htVDGHKLEVRIS 85   house mouse
XP_002953091  627 svLDGHKLVLQIS 639  Volvox carteri f. nagariensis
NP_193696     671 tvLDGHALILRFC 683  thale cress
EFN59300      422 taLDGHKLVLQLS 434  Chlorella variabilis
CBK19970      513 kaLDGHVLDLSFS 525  Blastocystis hominis
EDQ91767      971 ssLQEHTLELKMS 983  Monosiga brevicollis MX1
EGZ26394      617 tvVDGHALNLKLS 629  Phytophthora sojae
XP_655058     570 kvIDGHAVQIEIS 582  Entamoeba histolytica HM-1:IMSS
EEA08353      670 tvIDDHIIQLSMS 682  Cryptosporidium muris RN66
EAS00521      605 slLDGHSIQLSVS 617  Tetrahymena thermophila
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