1K8I,4P46,1I3R,4P4R,1HDM,4I0P,2Q6W


Conserved Protein Domain Family
MHC_II_beta

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pfam00969: MHC_II_beta (this model, PSSM-Id:395773 is obsolete and has been replaced by 425967)
Click on image for an interactive view with Cn3D
Class II histocompatibility antigen, beta domain
Statistics
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PSSM-Id: 395773
Aligned: 27 rows
Threshold Bit Score: 96.2212
Created: 22-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1K8I_B         8 STCVLnDAGTPQD-FTYCVSFNKDLLACWDPDVGKIVPCEFGVlsrlaEIISNILNEQESLIHRLQNGLQDCATHTQPFW 86  house mouse
XP_011956261  31 gECRF-SNGLQRMrFFARYIYNTKEDVHFDSDVGEFTALTELG-----RPDAEYWNQQKDFMEQMRAKVDTVCRSNYQgi 104 sheep
1I3R_F        43 SECHF-YNGTQRVrLLVRYFYNLEENLRFDSDVGEFRAVTELG-----RPDAENWNSQPEFLEQKRAEVDTVCRHNYEIF 116 house mouse
Q1MTC8        29 QQCFYsTSDYSDMvYLASYSFNKVVDTQFNSSVGKFVGYTEQG-----LIFAENFNKDQAYLHQLKAQVDTFCRHNAQIW 103 zebrafish
1HDM_B         9 STCLLdDAGTPKD-FTYCISFNKDLLTCWDPEENKMAPCns-----laNVLSQHLNQKDTLMQRL-NGLQNCATHTQPFW 81  human
Q6MGA7        27 STCLLdDEGTPMD-FTYCISFNKDLLACWDPEEGQIVPCEYGVlfklaEFISNILNKEEGLIQRLKNGLQDCSTHTQPFW 105 Norway rat
BAF62996      39 aECHY-LNGTERVrYLVRYVYNRQEYAHFDSDVGKHVADTPLG-----EPQAEYWNSNAEILENRMNEVDTYCRHNYGVV 112 chicken
P23068         8 VECHF-LNGTERVrFLVRHVYNRQQYVHFDSDVGLFVADTVLG-----EPSAKLFNSQPDVLEKNRAAVEMLCNYNYEIV 81  chicken
P13762        42 CECHF-LNGTERVwNLIRYIYNQEEYARYNSDLGEYQAVTELG-----RPDAEYWNSQKDLLERRRAEVDTYCRYNYGVV 115 human
Q3UUV9        42 aECHY-FNGKERVwSVTRFIYNQEEFARFNSDFGKFLAVTELG-----RPIVEYLNTQKDMLDNYRASVDR-CRNNYDLV 114 house mouse
1K8I_B        87 D 87  house mouse
XP_011956261 105 g 105 sheep
1I3R_F       117 D 117 house mouse
Q1MTC8       104 D 104 zebrafish
1HDM_B        82 G 82  human
Q6MGA7       106 N 106 Norway rat
BAF62996     113 E 113 chicken
P23068        82 A 82  chicken
P13762       116 E 116 human
Q3UUV9       115 d 115 house mouse
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