Conserved Protein Domain Family
Bbox2_TRIM46_C-I

?
cd19786: Bbox2_TRIM46_C-I 
B-box-type 2 zinc finger found in tripartite motif-containing protein 46 (TRIM46) and similar proteins
TRIM46, also known as gene Y protein (GeneY) or tripartite, fibronectin type-III and C-terminal SPRY motif protein (TRIFIC), is a microtubule-associated protein that specifically localizes to the proximal axon, partly overlaps with the axon initial segment (AIS) at later stages, and organizes uniform microtubule orientation in axons. It controls neuronal polarity and axon specification by driving the formation of parallel microtubule arrays. TRIM46 belongs to the C-I subclass of TRIM (tripartite motif) family of proteins, which are defined by their N-terminal RBCC (RING, Bbox, and coiled coil) domains, including three consecutive zinc-binding domains, a RING finger, Bbox1 and Bbox2, and a coiled coil region, as well as a COS (carboxyl-terminal subgroup one signature) box, a fibronectin type III (FN3) domain, and a B30.2/SPRY (SplA and ryanodine receptor) domain positioned C-terminal to the RBCC domain. The type 2 B-box (Bbox2) zinc finger is characterized by a CHC3H2 zinc-binding consensus motif.
Statistics
?
PSSM-Id: 380844
Aligned: 4 rows
Threshold Bit Score: 89.207
Created: 4-Sep-2018
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C H C C C C H HClick to see conserved feature residue pattern help
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens Midline-1 (2JUN) binds two Zn2+ ions through its B-box motif.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1            #  #        #  #    #  #     #  #          
Q7Z4K8       223 KGLMCPDHK-EEVTHYCKTCQRlVCQLCRVRRTHSGHKITPVLSAYQ 268 human
NP_001076569 200 KVLTCPEHDqERLQYYCKSCQMlLCSLCKLRRVHAGHKIAPVTQAYQ 246 zebrafish
KFU83964     197 KGLMCPEHK-EEVTHYCKTCQRlVCQLCRVRRTHTGHKITPVLNAYQ 242 chimney swift
OCT66762     217 KGLMCPDHK-EEVLLYCKTCQRlVCQICRVRRNHNGHKITPIISAYQ 262 African clawed frog

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap