Conserved Protein Domain Family
Filament_head

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pfam04732: Filament_head (this model, PSSM-Id:368088 is obsolete and has been replaced by 461414)
Intermediate filament head (DNA binding) region
This family represents the N-terminal head region of intermediate filaments. Intermediate filament heads bind DNA. Vimentin heads are able to alter nuclear architecture and chromatin distribution, and the liberation of heads by HIV-1 protease liberates may play an important role in HIV-1 associated cytopathogenesis and carcinogenesis. Phosphorylation of the head region can affect filament stability. The head has been shown to interaction with the rod domain of the same protein.
Statistics
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PSSM-Id: 368088
Aligned: 45 rows
Threshold Bit Score: 48.1555
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q05AI8         9 SSSSSYRRMFGGpgymtppmsRGVFGRASTGG-SGSSRVSSRVYEVSKSstsSPGFSGYRASSYSMpnlsagytrsyggm 87  zebrafish
Q6PF56         8 YLSSSYRKIFGDs--------PRASSSRPGPS-GSSRTTVPSGYRSHSLsrtNVPSSAYRRAGYLA-------------- 64  African clawed ...
Q6DDQ8         6 LYTSSYKKIFGD---------SPRSSSHLYTS-SGGG-SSSRSYRPREAy--TSSISSYRKVSRSPghl--------ssa 64  African clawed ...
P35616         9 YYTP-YKRRVVE------------SSPRVHIR-SSYVSPSRTTYS-------PLVSTTMRRSYATSssss------flps 61  African clawed ...
XP_004046845   9 YYSTSYKRRYVE-----------TPRVHISSV-RSGYSTARSAYSSYSAp--VSSSLSVRRSYSSSsgsl-------mps 67  western lowland...
Q02916         9 FFPS-YKRRYAD-----------SPRLHVSAMrSGGYSSARSAYSSLS----APVSSVSVRRSYATssasg----sllhs 68  Japanese quail
Q4SG66         7 YTQSSYRKIFGDsl-----rlSVSSSRMSRAS-SGLRA--------------MPPSHGPVSAYRRVgrpsga---fsvmp 63  spotted green p...
Q4S7N7         8 YSSSSYRKIFGD-------------SPRYA-S-SPSRNLSSRGGYRYSSs--SSVGRSNISSLGAHsrksgr---slamp 67  spotted green p...
Q16352        10 CSSSSYRKVFGD---------GSRLSARLSGA-GGAGGFRSQSLSRSNVa--SSAACSSASSLGLGlayr------rppa 71  human
NP_001138256   8 YMSSSYRKLFGDnp-----rfAGSRMSNVSPR-SSMSSSGFRSQSVSRSs--ASPAGYYKRSGRSSsfs--------pvh 71  zebrafish
Q05AI8        88 GETLDFSLADALNQEFLHTRT 108 zebrafish
Q6PF56        65 ADAVDLSQTSAVNNEYKIIRT 85  African clawed frog
Q6DDQ8        65 QDHFDLSQSTALSNELKIVRT 85  African clawed frog
P35616        62 VDTMDLSQVAAISSDLKIVRT 82  African clawed frog
XP_004046845  68 LENLDLSQVAAISNDLKSIRT 88  western lowland gorilla
Q02916        69 VDSLDLSQVAAISNDLKSIRS 89  Japanese quail
Q4SG66        64 AESLDLTQTSVVNNELKVIRT 84  spotted green pufferfish
Q4S7N7        68 LDTVDLAQSSVLNNEFKIIRT 88  spotted green pufferfish
Q16352        72 SDGLDLSQAAARTNEYKIIRT 92  human
NP_001138256  72 FDSVDFSQTSVLNNEFKIVRT 92  zebrafish
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