3K2S


Conserved Protein Domain Family
Apolipoprotein

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pfam01442: Apolipoprotein (this model, PSSM-Id:366645 is obsolete and has been replaced by 460211)
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Apolipoprotein A1/A4/E domain
These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein E.
Statistics
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PSSM-Id: 366645
Aligned: 118 rows
Threshold Bit Score: 44.9828
Created: 24-Apr-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3K2S_A           50 WDSVTSTFSKLREQLGPV--TQ--E-FWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRA 124  human
jgi:Desku_1108 1469 WDKVKAKTEEVWEGIKSYlsSAweS-IKSRAGEAWANLKDAISSGWDSIKSATTAAWDAIKDVVSAAWEGIKNVASAGWE 1547 Desulfofund...
EGI62644       3102 TKKIGEKIEETSADVAQI--AK--D-TKDAVIKEIKDDTKLVKGKLATSADAAAETADSAKEKMTKETKKAKEKTTSFFS 3176 Panamanian ...
EFZ09201       1335 KDKVIEKVSKDAQKVADV--TK--A-AGEKVATETKTVGEKIEETAKDVAQAAKDTKEAAVKEMKEDTKLVKEKLAASVD 1409 red fire ant
XP_025987639   6742 kDKTIATAKDTKDKIAEK--VS--E-DIDKVADATKAAKDKVTSELKEVGEKMDSTAQDVTQKIADTKDAVVKEVQDDTK 6816 red fire ant
EGI62644       3671 TKKIGEKIEETSADIAHV--AK--D-TKDAVIKEIKDDTKLVKGKLAASADAAAETSDSAKEKVTKETKKAKEKTTSFFS 3745 Panamanian ...
XP_025987641   4287 KDKTVSLAKDAEDKLVDT--TA--K-DIDKAAHDLKVVRDDVVSKTKDVVEKVETSVADVGRDIKDVKDTVVAAAKEDTK 4361 red fire ant
XP_011059094   4145 EDRTVFIAIDTKDKLADI--AA--K-DIDKATHDLKAARDDVVTKTKEVVDKVETSVADVGHDMKDIKDVAVIEAKEDAN 4219 Panamanian ...
WP_047114383    589 SSDIDTLSKDTEYNIKEN--LEkrLeILEKSSVEINGLVSRANEKLDTGIKDTEEKIDDIKKEISSYSDAYIESLKSHLK 666  Brachyspira...
XP_025987652   4540 IDNTKATADKVIADTKRV--AD--D-ITQDIADAKDSVTKEVKEDVQAAKEKLKADDEAVAEGAVTTKDKITKE------ 4608 red fire ant
3K2S_A          125 ElqeGARQ-KLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTL 203  human
jgi:Desku_1108 1548 AiknGVTA-AWEAVKNTTSAAWETIKNAVATAWENIKGVAAAGWEAVKNGITAAWETVKSVTTAAWEAVKNAIGATWDAI 1626 Desulfofund...
EGI62644       3177 GifkGAKH-AAEDVTDDVKEFLDETKKEAEMEEEHVKEKATASLKDLK----------------------DKKDTAVSEV 3233 Panamanian ...
EFZ09201       1410 Ata-----eAVDSAKDKATKEAKKAKDKTGRFFSGIFKGAKHSVEDTTADVKEFLDETKREASLEKERAEEEVAAGLKDL 1484 red fire ant
XP_025987639   6817 KvkeKLAT-GVE----TVTDGAGAAKDKATKEAKKVKEKGSGFLSGLFKGTKHAVDDVTDDVKEVLDETKKEALLEQEHA 6891 red fire ant
EGI62644       3746 GifkGAKH-AAEDVTDDVKEFLDETKKEAEMEEEHVKE-----------KAAASLKDLKDKKDTAVSEVQEIVDKAADRV 3813 Panamanian ...
XP_025987641   4362 VikkKLVA-RSESLSES-DVIKDKASKESKKAKEKASAFFSGIFRGSKHSVDSTMDDVKEFLDETKKEAA----LEQAQA 4435 red fire ant
XP_011059094   4220 VikeKLAA-KAESISDSVEITKDKTTKEAKKAKEKASGFFSGIFKGSKHSMDSAVDDVKEFLDETKKEAA----LEQTHV 4294 Panamanian ...
WP_047114383    667 NvldDYEQtKMKAITDSIDSVINQVDESEKRH-DELISNIENSIDDFKNKMDLAINENVKFNEESKKEVVDMLHNELRQA 745  Brachyspira...
XP_025987652   4609 ----------SKKVKEKGSGFFSGIFKGAKHAVEGAADDVKEFVDETKK---------EAALEEE--RAKEKLAAGLKDL 4667 red fire ant
3K2S_A          204 SEKAKPALEDLRQGLL---PvleSFKVSFLSALE 234  human
jgi:Desku_1108 1627 KGLVTSALDNVKSLITsawD---TVKSTTQAAWE 1657 Desulfofundulus kuznetsovii DSM 6115
EGI62644       3234 QETVDKAADRVKEAKDktvS---ALKDqkdkvve 3264 Panamanian leafcutter ant
EFZ09201       1485 EDKKDSVVSDVQRAADkaaT---DVKDAKDKVVF 1515 red fire ant
XP_025987639   6892 KEKAAATLKDLKDKKD---VavsEAQEIIDKTVA 6922 red fire ant
EGI62644       3814 KEAKDKTAETMKEAKD---KtvsALKDQKDKVVE 3844 Panamanian leafcutter ant
XP_025987641   4436 KEAAEAELKDLKHKVDsvvD---EAKEKETRVTK 4466 red fire ant
XP_011059094   4295 KEAAEAELKNLEHKTDrmiS---EAKEAKDRVTe 4325 Panamanian leafcutter ant
WP_047114383    746 TDAFDTLLNEKRDSMNkikD---EIEDIMH-RVE 775  Brachyspira hyodysenteriae
XP_025987652   4668 KDKRDTVVSEVDEAVDkavD---KAKDAKDKTVS 4698 red fire ant
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