Conserved Protein Domain Family
UBX_UBXN11

?
cd17077: UBX_UBXN11 
Ubiquitin regulatory domain X (UBX) found in UBX domain protein 11 (UBXN11) and similar proteins
UBXN11, also termed colorectal tumor-associated antigen COA-1, or socius, or UBX domain-containing protein 5 (UBXD5), belongs to the UBXD family of proteins that contains the ubiquitin regulatory domain X (UBX) with a beta-grasp ubiquitin-like fold, but without the C-terminal double glycine motif. UBX domain is typically located at the carboxyl terminus of proteins, and participates broadly in the regulation of protein degradation. UBXN11 may function as a cofactor of p97 (also known as VCP or Cdc48), which is a homohexameric AAA ATPase (ATPase associated with a variety of activities) involved in a variety of functions ranging from cell-cycle regulation to membrane fusion and protein degradation. UBXN11 also acts as a novel interacting partner of Rnd proteins (Rnd1, Rnd2, and Rnd3/RhoE), new members of Rho family of small GTPases. It directly binds to Rnd GTPases through its C-terminal region, and further participates in disassembly of actin stress fibers. UBXN11 also binds directly to Galpha12 and Galpha13 through its N-terminal region. As a novel activator of the Galpha12 family, UBXN11 promotes the Galpha12-induced RhoA activation.
Statistics
?
PSSM-Id: 340597
Aligned: 21 rows
Threshold Bit Score: 98.0629
Created: 26-Jun-2015
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
Feature 1:putative UBX-p97 interaction site [polypeptide binding site]
Evidence:
  • Comment:based on the structural evidence that Rattus norvegicus UBX domain of p47/UBXN2C (1S3S) in complex with p97, contacts at 4A
  • Comment:Hexameric p97 N terminal domains are complexed with UBX domain of p47 through a loop that is highly conserved in UBX domains but is absent in Ubiquitin.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1            # # ##  ## #                                      ## #                 #### #
Q5T124        395 PLSMLRIKSenGEQAFLLMMqpDNTIGDVRALLAQARvmd------asAFEIFSTFPPTLYQDdtLTLQAAGLVPKAALL 468  human
XP_001746827  450 DIATLQVKSedGKVTLIVKLrfNDSVADVRRCIDQHRgts-----vdaTYRIYTTYPRKLLDDssATLLDLDLVPNATLR 524  Monosiga brev...
XP_003060822  178 EVTTLRVKGmdGRRMYALTLraSDTVGKLRAYLKRATeededdknvglGFEIRGAYPPRAYADddETLMEAGLVPNAALL 257  Micromonas pu...
XP_002132128  460 DVTTIRVKSedGSKIFILKLkfSDTIQDLRNYIKKQRprh------rePYDILSTFPNQKHSDlkKTMQDSGLVPNATLF 533  vase tunicate
XP_011662007  460 DVTTLRVKSesGDHTYIXKLrfTDTIGDLMRMHLDKQrkp-----hapDYILVTTFPNRTYTDleSTLEASGLTPNATVL 534  purple sea ur...
XP_001701565  354 EVTTLQVKSmdGKQTFILKFryDDTIGALRTALNAHHtksg---hagmAYEIRSAFPARAYADeaETLRAAGLIPNGTLF 430  Chlamydomonas...
KXJ24367      264 KVTTLRIKSetGEKTYLVKMsfTDTIADLREHLNAVRpkg------apDYNIKSSFPNKVYSDlsATLVECGLVPNATLH 337  Exaiptasia pa...
ELU05533      130 ELTTLRIKSeqGDHTYILKMrfSDTIRDVRDCLNKQRska------stAYQIMSTFPNRVYDDdfASLKECGLTPSATLH 203  Capitella teleta
XP_003384072  437 RLVTLRIKSetGETTYILKMhsSDTIGDIHKQLNKIKskq-----ekkGFVLKGAFPPRSFTDmnITLKDSGLVPSANLF 511  Amphimedon qu...
XP_018024765 1125 IITTLRIRAanGTQTYLIKLkaNDTLEKLRTYLRSYRdg-------ddNFEVVRTFPYQVLDQnsATMAELGLVPNATLH 1197 Hyalella azteca
Feature 1          #
Q5T124        469 LR 470  human
XP_001746827  525 LV 526  Monosiga brevicollis MX1
XP_003060822  258 LK 259  Micromonas pusilla CCMP1545
XP_002132128  534 LK 535  vase tunicate
XP_011662007  535 MK 536  purple sea urchin
XP_001701565  431 LR 432  Chlamydomonas reinhardtii
KXJ24367      338 LL 339  Exaiptasia pallida
ELU05533      204 LK 205  Capitella teleta
XP_003384072  512 LA 513  Amphimedon queenslandica
XP_018024765 1198 LK 1199 Hyalella azteca

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap