Conserved Protein Domain Family
SWIRM-assoc_3
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pfam16498: SWIRM-assoc_3 (this model, PSSM-Id:318658 is obsolete and has been replaced by 465145)
SWIRM-associated domain at the C-terminal
Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.
Links
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Statistics
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PSSM-Id: 318658
Aligned: 27 rows
Threshold Bit Score: 59.9839
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q17CZ4         721 VDPRIAASAAKAAMEEFAAIKDEVPATMMDAHLKNVEKSS-FGGKFDPY-AGLATSGIAGTGPDK 783  yellow fever mosquito
6_pfamImport     1 VDPRVASKAAKAALEEFAKMKEEVPPLVAEAHALNVEAAS-AGGKIDGS-AGLSVSGIADDKTDK 63  
16_pfamImport    1 VDPQVAAAATKAAMEEFSKLKEEIPPLVAEAHEKNVAAIAeKTGNVDGN-VGLHKSGLSPQDQAE 64  
4_pfamImport     1 VDPRVASSAAKAAIEEFSKIKDEVPPALIEAHVKKVEDAA-KSGTLTPD-LLLEDTGIAGTGTEE 63  
7_pfamImport     1 VDPRVASAAAKAALEQFGKDRDEIPPALLLAHTKNLEAVYaETGKLESE-IGLAYSGIAGTGEED 64  
15_pfamImport    1 VDPRVAAAAAQAALTEYAKMRDEVPAGLLQEHKARVEAAVrLGQPVDPAkFGLDEVG-SGKSLEQ 64  
EGT49233       349 VDPQVAAAATKAAMEEFSKLKEEIPPLVAEAHEKNVAAMAeKTGKIDGA-VGLVKSGLKPADDGE 412  Caenorhabditis brenneri
EGT37433       360 VDPQVAAAATKAAMEEFSKMNLDVPPMVAEAHEKNVAAMAeKTGVIDGS-VGLTKSGLKPRDEDD 423  Caenorhabditis brenneri
KKA73423       352 VDPRVAAAATKAALEQFAKVKDEVPPLLVEAHAKNVQAHFdRTGVVDGN-YGLEKSGIATEADAA 415  Pristionchus pacificus
XP_011669098   706 VDPRVASAAAKAAIEEFAKMKDEVPTTLVDVHIRRVEDAAeK-GLLDGK-YLLGVSGIAGTNEQQ 768  purple sea urchin
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