Conserved Protein Domain Family
RPAP3_C

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pfam13877: RPAP3_C (this model, PSSM-Id:316400 is obsolete and has been replaced by 464012)
Potential Monad-binding region of RPAP3
This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.
Statistics
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PSSM-Id: 316400
Aligned: 159 rows
Threshold Bit Score: 31.3945
Created: 28-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q5XF05         352 TPKSAYEFENSWRSF-SGDSALRS---QLLKvTTPSSLPQIFK-NALTSPVLVDIIKCVASFFTE----DMDLAVKYIEN 422 thale cress
36_pfamImport    1 ---SAFEFVKTWEEV-KKFDPSYSkraEIIRlIKPGDLGKVIG-IKLDSDMLSSLLECLEKHFVEt---EPKIVVEFLKQ 72 
54_pfamImport    1 --ESPYEFLRLWQSL-KDDVNLELh-aKLLRyIAHEDMNKIIG-NKLDAAMFSLILRCLDQQFCTp--kDTELLANLLYS 73 
39_pfamImport    1 --ESPYEFLRLWESL-KNNTNLQLh-aKLLRsIAHRDLNKC---NKLDGAMFSLILRCLEQQFCTp--nDMDLLADLLYS 71 
98_pfamImport    1 -PENSTVFEKDFNQL-KNNRDKFY---AYIKqIPGDHYAKIYDkNDIPSNILLAIVQVLQECGIGd---NKEMCQNIVRG 72 
101_pfamImport   1 NPQNTFQYEQEFDTFkKHSDKLYL---YIKK-LPTDIYKKVFSkKDYPPTYLLLILDAINKHSKQe---DYPLLVEVFQN 73 
59_pfamImport    1 PPRDYQEFYAAVSMLnKSHSSLPLa-eYFTR-IDINSYRRLFD-DLLDDITASHVFEALLYHLQTgrtiS--LLAERLLM 75 
Q18405         180 HPKDYQDFVGAVNMLkRAQSLLPLa-eYFLN-ISMDKYSELFD-ELLDDVYAVQIFKALNFHLKTgrtiP--HLAARMMI 254 Caenorhabditi...
42_pfamImport    1 HPKDYQDFVAAVSLLsKAPSLLPLa-eYFLN-IKVEKYHELFD-VLLDDAYASHIFNALNFHLKTnrtiP--NLAERMLK 75 
105_pfamImport   1 PVSNVKEFLQTWKIAsQKNNYELYh-kLLRS-IKPQDLPRVIS-TNLDEEIMSKFLETLNQKFDPnselD--LIVEYLTA 75 
Q5XF05         423 LTKVPRFNMLVMCLTST 439 thale cress
36_pfamImport   73 LPEIPRFGLIKMFLAEA 89 
54_pfamImport   74 LSRLSRFSIISMFMDSG 90 
39_pfamImport   72 LSQLSRFSIVNMFMDSK 88 
98_pfamImport   73 LTKTSKFNLCVKFLTKK 89 
101_pfamImport  74 IKDTYKFNMCLMQITKD 90 
59_pfamImport   76 LAELNRFDLVICLMSPA 92 
Q18405         255 ISELSRFDLLIAFMSEE 271 Caenorhabditis elegans
42_pfamImport   76 LADLSRFDLLIALMPNS 92 
105_pfamImport  76 MTKVNRFNLIVKMLDNK 92 
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