Conserved Protein Domain Family
APC_basic

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pfam05956: APC_basic (this model, PSSM-Id:310501 is obsolete and has been replaced by 428690)
APC basic domain
This region of the APC family of proteins is known as the basic domain. It contains a high proportion of positively charged amino acids and interacts with microtubules.
Statistics
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PSSM-Id: 310501
Aligned: 12 rows
Threshold Bit Score: 297.941
Created: 19-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P25054       2223 SISRGRTMIHIPG-VrnSSSSTSPVSKKGPPL---------K--------TPAsKSPSEGQTATTS-PRGAKPSVKSELS 2283 human
XP_008122667 1928 VVFRGRTVIYMPK-V--SKESQVQSPRCTPKKtgpi--tktE--------SPL-KNGNLNQQRSRSlHRPGKISEIADLS 1993 green anole
XP_015220786 2017 VVFRGRTVIYMPNpKkeTNSSQKPPLKKTSPKt--------E--------TPV-KNPNLAQQRSRSlHRLGRANDSTELS 2079 spotted gar
XP_007240270 1960 VVFRGRTVIYTP--KkeTTLSQRPPPKKVTPK---------D--------AP--KNPNLAQHRSRSlHRLGRPNDSTQLS 2018 Mexican tetra
XP_005999939 1983 VVFRGRTVIYMP--------KESASPRSTPKKta-----knD--------AFP-QNSNQLQQRSRSlHRLEKSTELADLS 2040 coelacanth
XP_012904217 1784 AVLRGRTVIYVPSpAprAQPKGHPGTHVAPRKm--------GppspaqpgAPA-KTPSPGQQRSRSlHRPGKSSELAALS 1854 domestic ferret
XP_013131378 2113 VVFRGRTVIYTP--KkeMAPSQRPPPRKVPTKt--------D--------AP--KNPNLAQHRSKSlHRLGHPQD-MELS 2171 Nile tilapia
XP_011472584 1954 VVLRGRTVIYTP--KkeTAPSQRPPPRKVSTKt--------D--------AP--KNPNLAQHRSKSlHRLGHPQD-TELS 2012 Japanese medaka
XP_005805281 1961 VVFRGRTVIYTP--QqaTAPSQRPPPRKMPTKt--------D--------AP--KNPNLAQHRSKSlHRLGQPQD-VELS 2019 southern plat...
XP_604945    1752 AVLRGHTVIYMPTpAtrAQPRGAPGSRIVARKmgapspvqpA--------APT-KAPNPGQQRSRSlHRPGKISELATLS 1822 cattle
XP_006513709 1763 TMLRGRTVIYSAGpAsrTQSKGISGPCTTPKKtgtsgttqpE--------TVT-KAPSPEQQRSRSlHRPGKISELAALR 1833 house mouse
XP_015461559 2145 VVSRGRTMTHVPG-VrsSSPSTSPIPKKPPAR---------G--------QVA-KPPSQGPNSVNS-PRSIKPPSKTDPS 2204 Mexican tetra
P25054       2284 PVARQTSQIGGSSKAPS--RSGSRDSTPSRPAQQPLSRPIQSPGRNSISPGRNGISPPNKLSQLPRTSSPStastksS-- 2359 human
XP_008122667 1994 LPKRSATPPARMTKAPS--SGSSRTSTPSQPNQKKLTSPSQPQASSRGSGKADLSSSSPGANPKPVQKSPA------S-- 2063 green anole
XP_015220786 2080 LPKRSSTPPARIPKSTS--SGSSQNSTPSRQPQKKLTSPSQSSKQIPKKDVK------PTNSPTDKKTSPAaspspkS-- 2149 spotted gar
XP_007240270 2019 LPKRSSTPPARIPKSSS--SGSSQSSTPCRQPYKKITSPTQTVKQSPKVA-----SSAPSSPPEKKGCVSPpnqnpkS-- 2089 Mexican tetra
XP_005999939 2041 LQKRSATPPARISKGPS--SGSSRNSTPSRQPQKKLTSPSQINKQLTGPGTRSNGSIP------EKKCNPAvstttkSdn 2112 coelacanth
XP_012904217 1855 PPQRSATPPARLAKAPS--SGSSPASPASQAPTRRLPTGTQAAGPLPGPGAA------------LVPQTPTrallskQ-- 1918 domestic ferret
XP_013131378 2172 LPKRSSTPPPRIPKSSS--SGSSQSSTPSKQSQKKitspaqtnksiqKKNATpassppATSPPERKGRSPVvnqnekS-- 2247 Nile tilapia
XP_011472584 2013 LPKRSYTPPPRIPKSSSsgSGSSQSSTPSKQSQKKITSPTQTNKAIEKKSTTspsgssVSSPPERKGRSPVvnknekS-- 2090 Japanese medaka
XP_005805281 2020 LPKRSSTPPPRIPKSSS--SGSSQSSTPSKQSQKKTVSPTQTGKPIQKKTTSssssspASSPPERKGRSPVlnknekS-- 2095 southern plat...
XP_604945    1823 PPQRSATPPARLAKTPS--SSSSQTSPASQPLPRRSPPAAQPAGPLPGPRAS------------PVPKTPArallakQ-- 1886 cattle
XP_006513709 1834 HPPRSATPPARLAKTPS--SSSSQTSPASQPLPRRSPLATPTGGPLPGPGGS------------LVPKSPArallakQ-- 1897 house mouse
XP_015461559 2205 PARESPATPGGSSKASS--RSGSRDSTPSRPPQQSLTRPMQSPGRNSVSPGRngltppNKLSQIPRTVSPSaas-kpA-- 2279 Mexican tetra
P25054       2360 ----GSgK-MSYTSPGRQMSQQNLTK-Qt-gLSKNASSI------------P---RSESASKGLnqmnngnGANKKVELS 2417 human
XP_008122667 2064 ----KQ-N-KTQKSPVRIPFMQKPAK-Kt-iLMRNTMPVleeqvgrgtgrdP---RPKSNVKGT-------LQSSRLNLV 2125 green anole
XP_015220786 2150 ----PA-HkKTQKSPVRIPFMQTPSR-Qp-mASRTISPLvtn------qpsPgisRQNTQLKr-------tLPANRLDLV 2209 spotted gar
XP_007240270 2090 ----PPdS-KTQKSPVRIPFMQNPTR-Q----SRAISPLvtnqp--tstnrP---NSGTQITGRr-----iLPANRLDLV 2149 Mexican tetra
XP_005999939 2113 kspgPK-N-KTQKSPVRIPFMQTPTK-KvipQRNNSSPLin--------qfN---RQKQNLNGKn------LQPTRLDLV 2172 coelacanth
XP_012904217 1919 -------H-KTQKSPVRIPFMQRPAR-------RGPPALaraa----pepgP---RGRAAAEGSp-----gARGGRLGLV 1971 domestic ferret
XP_013131378 2248 ----PP-P-KTQKSPVRIPFMQNSVR-----QPRPLSPLvtn------qttG---RQTNQVNGkr-----vVPANRFDLV 2302 Nile tilapia
XP_011472584 2091 ----PP-P-KTQKSPVRIPFMHTSTK-----QPRPLSPLvtn------htvN---RQISQVNGkr-----mAPVNKFDLV 2145 Japanese medaka
XP_005805281 2096 ----PP-P-KTQKSPVRIPFMQNSTR-----QPRPLSPLvtn------qtsP---K---QINGkr-----vSPANRFDMV 2147 southern plat...
XP_604945    1887 -------H-KTQKSPVRIPFMQRPAR-------RGPPPLaraa----pepgP---RGRVGAEGgs-----aARGGRLGLV 1939 cattle
XP_006513709 1898 -------H-KTQKSPVRIPFMQRPAR-------RVPPPLarps----pepgS---RGRAGAEGtp-----gARGSRLGLV 1950 house mouse
XP_015461559 2280 ----GSgR-MTYASPGRQLSQHTPSKqQs-gLPRSTSGI------------P---RSESASKVlnqs-gasGPPKKAELS 2337 Mexican tetra
P25054       2418 RMSSTKSSGSE-SDRSerpV-LVRQSTFIKEAPSPTLRRKLEE------SASfESLSPSSRPASPTRSQaqtpvlsPSLP 2489 human
XP_008122667 2126 RVSSARSVSGE-SDRS---G-FLRQLTFIKESSTLLMRHRTKLssssapRAS-SPCSSLSQGASPRRGR-------LGLP 2192 green anole
XP_015220786 2210 RMSSTRSSSSE-SDRA---G-FLRQLTFIKESPS-LLRQRSEI------PSS-RSV-PTSKCASPRKMR-------PGAP 2268 spotted gar
XP_007240270 2150 RMTAAHSRSGE-TDRN---G-FLRQLTFIKESANVS---RQDI------PGL-RSV-PTSKHGSPRRAR-------PGAP 2206 Mexican tetra
XP_005999939 2173 RMSSARSSGSE-SDKS---G-FLRQLTFIKESSSHILRQRSEI------SSS-ESLSSLSRCASPRKSK-------SDIP 2233 coelacanth
XP_012904217 1972 RVASARSSGSE-SSDR---SgFRRQLTFIKESPGLLRRRRLEL------STP-EAARPASQGGSPRRSQ-------PALP 2033 domestic ferret
XP_013131378 2303 RMTSVHSSGSE-SDRN---G-FLRQLTFIKESKT-MLRR--D-------SSA-RNAAG-SQNGSPRRAV-------PGAS 2358 Nile tilapia
XP_011472584 2146 RMTSVHSNGSE-SDRS---G-FLRQLTFIKESKT-ALRR--D-------SCP-RNMPG-SQNGSPRRAV-------PGAP 2201 Japanese medaka
XP_005805281 2148 RMTSVHSSSGE-SDRN---G-FLRQLTFIKESRT-PFRR--D-------GSP-HNTPR-SQNGSPRRAA-------PGAT 2203 southern plat...
XP_604945    1940 RVASARSSGSEsSDRS---G-FRRQLTFIKESPGlMRRRRSEL------SAP-EATNPtTQAASPCRGR-------PALP 2001 cattle
XP_006513709 1951 RMASARSSGSEsSDRS---G-FRRQLTFIKESPGlLRRRRSEL------SSA-DSTAStSQAASPRRGR-------PALP 2012 house mouse
XP_015461559 2338 RMSSTKSSGSE-SDRSekpG-LVRQSTFIKEAPSpTLKRKLEE------SASfESLSP----SSPSQSQtpv--ssPSLP 2403 Mexican tetra
P25054       2490 DMSLSTHSSVQAGGwrKLPPNL------------------S------------------------PTIEYNDGRPAKRHD 2527 human
XP_008122667 2193 TVFLCSSRCDDLKA--EKPLGA------------------S------------------------QRPVIPRGTPVGTKP 2228 green anole
XP_015220786 2269 AAFLCSSRCQELKGvgQGPRET------------------Qdegqgqga---------qrqraalSRASSSDRGLSGVRP 2321 spotted gar
XP_007240270 2207 AVFLCSSRCQELKPtaQGPRRL------------------Qglqgqrngqe----qgilkqnmtlSRANSTDRDLTVRRP 2264 Mexican tetra
XP_005999939 2234 AVFLCSSRCQELKVakPVMPNH------------------N------------------------VTLSKTT-TSSDRKH 2270 coelacanth
XP_012904217 2034 AVFLCSSRCDELRAapRQAPVP------------------Q--------------------------RAPAARPSPSERP 2069 domestic ferret
XP_013131378 2359 AVFLCSSRCQELKAavQPPRRVqvkdpdqkqqiqrpntglQkqt------------------ttlSRATSSERDLSSRRP 2420 Nile tilapia
XP_011472584 2202 AVFLCSSRCQELKAtvQAPKRV------------------QvkdppqtwqdqkptqglqkqtstlSRATSSERDLT-KRA 2262 Japanese medaka
XP_005805281 2204 AVFLCSSRCQELKVavQAPKRV------------------QlkdpgkvqqvqkpapglqkqtttlSRATSSERDLSGRRP 2265 southern plat...
XP_604945    2002 AVFLCSSRCDELRAgsRQAPAP--------------------------------------------QRAHTARPRPSERQ 2037 cattle
XP_006513709 2013 AVFLCSSRCDELRVspRQPLAA--------------------------------------------QRSPQAKPGLAPRA 2048 house mouse
XP_015461559 2404 DMSLSL--PYQGSGwkKSPQSQ------------------N-------------------------SSENGDGKSMRRQD 2438 Mexican tetra
P25054       2528 IARSHSESPSRLPInRSGT---------WKREHSKHSSSLPRVSTWRRTGSSSSIL 2574 human
XP_008122667 2229 PRRTSSESPSRLPV-KTNN---------LPPEPFKRYSSSPQINVTKRTASLASTV 2274 green anole
XP_015220786 2322 ARRTSSESPCRAPQ-KNISga-----wqRERDTFKRHSSSPHINILKRATsrssil 2371 spotted gar
XP_007240270 2265 ARRTSSESPCRIPQ-RNIPepk---preKKDDTFKRYSSSPSINVLsrvtsrsslr 2316 Mexican tetra
XP_005999939 2271 PKRTSSESPSRPPV-KNNP---------MQREILKRHSSFPHINMRKRTNSPSVFS 2316 coelacanth
XP_012904217 2070 ARRPSSESPSRLPV-RTPT---------APPEAVKRYASLPHISVARRpdgaapga 2115 domestic ferret
XP_013131378 2421 ARRTSSESPCRVAQ-RNGPgrvsglrqqQDKDTFKRHASSPSINILSRVTSRSSLR 2475 Nile tilapia
XP_011472584 2263 ARRTSSESPCRMAE-RNGPartsggkkqQDKDTFKRHASSPSINILSRVTSRSSLR 2317 Japanese medaka
XP_005805281 2266 ARRTSSESPCRVAQ-RSATgrisgvrhqQEQDTFKRHASSPSINILSRVTSRSSLR 2320 southern platyfish
XP_604945    2038 PRRTSSESPSRLPV-RTPA---------AGPETVKRYASLPHISVARRPDATIPEP 2083 cattle
XP_006513709 2049 PRRTSSESPSRLPV-RASP---------GRPETVKRYASLPHISVSRRSDSAVSVP 2094 house mouse
XP_015461559 2439 ISRSHSESPSRLPInRAGT---------WKREHSKHSSSLPRVGTWKRTGSSSSIL 2485 Mexican tetra
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