4RZ9


Conserved Protein Domain Family
PRP38

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pfam03371: PRP38 (this model, PSSM-Id:308787 is obsolete and has been replaced by 460901)
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PRP38 family
Members of this family are related to the pre mRNA splicing factor PRP38 from yeast. Therefore all the members of this family could be involved in splicing. This conserved region could be involved in RNA binding. The putative domain is about 180 amino acids in length. PRP38 is a unique component of the U4/U6.U5 tri-small nuclear ribonucleoprotein (snRNP) particle and is necessary for an essential step late in spliceosome maturation.
Statistics
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PSSM-Id: 308787
Aligned: 162 rows
Threshold Bit Score: 124.871
Created: 17-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4RZ9_A        10 HSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTA-ELVVDKAME-LRFVGGv-YGGNIkptpFLCLTLKMLQIQPEKD- 85  human
Q4U8Q2       128 IPM-TNSVTYNMNDLLRSNILSSEYYK-SL-SVKNfYQVFDELVQfASHCEPycSTATRapstIFCCLYRFLVLKLTEKq 204 Theileria annulata
Q8IM21       173 LEM-TNTTTYNVNTLLRNNILSSEYFK-SLIPIKTfKEVVDEIHSyADHVEPycIGSNRapstLFCCLYKFFTMQLSEK- 249 Plasmodium falc...
A0CFN0        86 iPIRGENAISNMNSLVRQNILTCPYYK-ELLQIRDiNDIVTETDKiVTSVGTwaGPGvp--ssFFCILHKLMSMNLNVK- 161 Paramecium tetr...
XP_008859502   7 LPTQGNTRTMNIDSILFTNITHSDYMFKTLGSIHSiSDLIDIIINdVHYISPyiQKSSSspstAFCVLLRLFQLNPTPD- 85  Entamoeba nutta...
XP_002788106 107 lvvvNQGPLYGLYPTLVQNIQSSDYFNKGLRGMSTvEEVVEEVERaVEHAEPynVGALNipstMFCCLYKLCSKGQARP- 185 Perkinsus marin...
KFG63367     141 vEM-TDSTTYNVNALLRSNILSSEYFK-SLHELKTvPEVVDEITQyAQHAEPycSGSSRapstLFCCLYKLFTMKLTTK- 217 Toxoplasma gond...
XP_013253230 135 VQM-TDSTTYNVNQLLRANILSSEYFK-SLHQLKSfHEVVAEVAAyADHAEPycSGSTRapstLFCCLYKLFTLKLTDK- 211 Eimeria acervulina
XP_001612015 171 LDM-TNSSTYNMNTLLLNNILNSDYYK-SLSTMTShHSIIDELAQyADHVEPycKTATRvpstLFCCLHKLFTLRLTER- 247 Babesia bovis T2Bo
XP_011128465  56 LEM-TNTTSYNLNPMLKENILVSEYYK-SLYQFTTvPELIDEVVQyVDHVEPhvTGHLKipstFACCLYKLFNLRCTED- 132 Gregarina nipha...
4RZ9_A        86 ---------IIVEFIKNEDFKYVRMLGALYMRLTGTAIDC----YKYLEPLYNDYRKIKSQNRNGE---FELMHVDEFID 149 human
Q4U8Q2       205 vifslievvQMNFLLENNKSPYARCCGFLYLRYVLPPDKVtkikFICFSSGIDDEfftv---sadG---NKQITMGEYAE 278 Theileria annulata
Q8IM21       250 ---------QLKSLIENKDSCYIRACGFLYLRYVHSPANL----WMWFEPYLLEEDefsi--scdK---RRKVTIGEYVQ 311 Plasmodium falc...
A0CFN0       162 ---------QLQILCDWKLNPYVRCLGLLYLRYSLDPNFL----WGWMKRYILDEQefkp-------skdENITIGDFCE 221 Paramecium tetr...
XP_008859502  86 ---------DIRMMSTHS-NKYVRCIAALIIRYSIQFNLL----LSYLKPFVDD-RAVVNISLHGe----KTKQIKCLVK 146 Entamoeba nutta...
XP_002788106 186 ---------SWSLSLGTASRRYVVCLGLLYLRCVAQPSSL----WTWFYPVLFDTTVFHPEEVTGeaqaAESMMLGRYAE 252 Perkinsus marin...
KFG63367     218 ---------QLEQLLDYSDSPYVRCTGFLYLRYVHPPEKL----WKWYEQYFLDDEvfaa--ssdT---KRTTTMGEYVE 279 Toxoplasma gond...
XP_013253230 212 ---------QMHMLLNHRESPYVRCTGFLYLRYVHPADQL----WKWFEPFFLDDEqftp--gadP---NRVVSIGEYAQ 273 Eimeria acervulina
XP_001612015 248 ---------QMEDLIDCTKSPYPRCCGFLYLRFVLPSDQL----WAWFEPYLMDEEtfvm--svnP---TRKTTIGKFCE 309 Babesia bovis T2Bo
XP_011128465 133 ---------EMLTITEHPNL-FVRTLGFVWLRFVHPPEKL----WQWFETVVLDDTdfrp-------tknQTTTFGEFAE 191 Gregarina nipha...
4RZ9_A       150 ELLHSERVCDIILPRLQKRYVLE 172 human
Q4U8Q2       279 SLLMDDKYYHTILPRLPVRVKnl 301 Theileria annulata
Q8IM21       312 SLLSDDKYFNTVLPRLPIKIKNV 334 Plasmodium falciparum 3D7
A0CFN0       222 RLLTDLNYYNTRLPRIPQQIDTI 244 Paramecium tetraurelia
XP_008859502 147 DLILEPKFEGCILPRIPQvyykp 169 Entamoeba nuttalli P19
XP_002788106 253 LLLLTHKYFTVNLNRLPETIlqk 275 Perkinsus marinus ATCC 50983
KFG63367     280 SLIMEDKYFNTVLPRLPVKVKnl 302 Toxoplasma gondii RUB
XP_013253230 274 SLLTEDKYFSTVLPRLPVLVKNV 296 Eimeria acervulina
XP_001612015 310 SLLVEDRYFNTVLPRLPSRFKNM 332 Babesia bovis T2Bo
XP_011128465 192 SLLKEDRYFNTPLPRLPAKIRTH 214 Gregarina niphandrodes
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