Conserved Protein Domain Family
DNA_pol_alpha_N
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pfam12254: DNA_pol_alpha_N (this model, PSSM-Id:289058 is obsolete and has been replaced by 463508)
DNA polymerase alpha subunit p180 N terminal
This domain family is found in eukaryotes, and is approximately 70 amino acids in length. The family is found in association with pfam00136, pfam08996, pfam03104. This family is the N terminal of DNA polymerase alpha subunit p180 protein. The N terminal contains the catalytic region of the alpha subunit.
Links
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Statistics
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PSSM-Id: 289058
Aligned: 120 rows
Threshold Bit Score: 52.8703
Created: 22-Jul-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q6BLQ9         11 LKELKEARQAGSSLITYS--DGEDDQGIYDEVDEETYRERKRNQMMND-D-FIVDDNGEGYVDNG-V-DEW 75   Debaryomyces hansenii
XP_002974049   24 LEQLKRLREGGGRRVDTF--ELKVEEQIFDRLDEKDYALLVAKRRLESqD-FVVDDDGLGYADIG-E-EEn 89   Selaginella moellendor...
XP_003567311   29 LERLRAIRSGGARAAAAA--QVKMEDPIYDTVAEDDYAALVARRRKDA-GaFIIDDDGLGYVDDG-ReEDW 95   Brachypodium distachyon
XP_002458830   31 LQQLRAVRNGEIRASDVI--QVKVDAPIYDTVPEEEYNVLVARRKKEAgE-FIIDDDGLGYVDDG-ReEDW 97   sorghum
XP_009393418   25 LERLKALRSSGGRRSDAGglQIKMEAPIYDTVAEEDYAALVARRREEArG-FIVDDDGLGYTDEGqE-EDW 93   wild Malaysian banana
NP_001266164   27 LERIKALRTGGRRSTENGglQVKIDEPIYDVVEDDEYNDIVAKRREAArG-FIVDDDGLGYGDEGqE-EDW 95   tomato
XP_004970715   29 LDRLRAIKEGRTRAADAV--QVKVDAPIYDTVAEEDYNALVARRRKEAgE-FIIDDDGLGYAEDG-ReEDW 95   foxtail millet
XP_006573639   25 LERLKA-RIHGGRRSDATgpQIRLENPVYDTVPEDEYNALVAKRREQArS-FIVDDEGLGYGDEGeE-EDW 92   soybean
ERN08693       23 LERLKALRDGTVQKTP----EIKLAEPIYDSLPEDEYARLVAERKASAkE-FIVDDNGLGYGDEGeE-EDW 87   Amborella trichopoda
XP_001779378   24 LSELKKLKDEGGRRVNNY--QVREEDKIYDSLSEADYNLLVLKRREEVkN-FVVADDGLGYADIG-E-EEd 89   Physcomitrella patens
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