Conserved Protein Domain Family
Seipin

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pfam06775: Seipin (this model, PSSM-Id:284243 is obsolete and has been replaced by 462007)
Putative adipose-regulatory protein (Seipin)
Seipin is a protein of approximately 400 residues, in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene. This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in human, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V.
Statistics
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PSSM-Id: 284243
Aligned: 137 rows
Threshold Bit Score: 76.7611
Created: 15-Jul-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q6C222        23 IQLTLLfAAIAYVAL-YQFYIP--VNS-LS-LPLDFDFStedgayavaklhgdvvslnyvepathalwkyvpfvstpspa 97  Yarrowia lipoly...
EPB87996     108 AWILLT-SFTAYLTF-YQRYIP--KTA-HV-EPIYFQYTd---------------------------------------- 141 Mucor circinell...
EPB92298     100 SWIIVT-SIVAYIMF-YNQYVP--PIT-HV-QPIWFHYKp---------------------------------------- 133 Mucor circinell...
XP_004995916  58 AVCYAA-SVFIYGVT-YWWIVP--EPE-HS-WPLYFDYGsk--------------------------------------g 93  Salpingoeca ros...
XP_002905330  61 SFLFAT-ASLLYAFM-YYLVIP--SRF-HE-QDIFFNYGnrhmdiy----------------------------vqggqt 106 Phytophthora in...
EJK50087      83 vlllvM-SISSYGLI-WRQIMG--GLE-VRaFPVFFDYDn---------------------------------------- 117 Thalassiosira o...
XP_002181511  88 gLLLTV-SLASYWMC-YQAAMP--SRH-SS-KLLYFDYTgsalprlmaakv------------------pfrpvedsess 143 Phaeodactylum t...
XP_003062455  48 tFLLFV-AFFLVVAF-RFIVVPtgPSS-TH-QELIFDVTs---------------------------------------- 83  Micromonas pusi...
XP_001746817  46 hVMLGA-GVVIYGLF-YYAYVP--KAA-YE-WPVHLTQT----------------------------------------- 78  Monosiga brevic...
XP_002286702  63 IALLIL-SMGTYWLIyWGVIMR--GLEvRS-RPIFFDYSvg--------------------------------------e 100 Thalassiosira p...
Q6C222        98 PEAPHNRVTTfgr--------------prdRikt---------------------------------------------- 117 Yarrowia lipoly...
EPB87996     142 IERPQGQVYFrgp--------------npvMp------------------------------------------------ 159 Mucor circinell...
EPB92298     134 LQGPKALIDIrsm------------------------------------------------------------------- 146 Mucor circinell...
XP_004995916  94 GQRPLTHVYLshd--------------trhAl------------------------------------------------ 111 Salpingoeca ros...
XP_002905330 107 PIIPTASLELqdpvhqwqsfvvkpdeptqpVl------------------------------------------------ 138 Phytophthora in...
EJK50087     118 GDFPRGLVDIhsn--------------kqaPwlyesgfssslsnyrndsslerpk-----ndscsrnqvdestrfeieel 178 Thalassiosira o...
XP_002181511 144 YQGPWALVDLfsk--------------qphWeafsheilp-----------------------------------pptts 174 Phaeodactylum t...
XP_003062455  84 -SAPVASASFlse--------------ekrAylrspaaftkptada-----------------------patisdkalrr 125 Micromonas pusi...
XP_001746817  79 GAEPLASI------------------------------------------------------------------------ 86  Monosiga brevic...
XP_002286702 101 SIMPMGRVDLrstrnapw----iqscdnslAsshlstselcmnedkrqvvvldnpnayckestgscatlgeaeatntptk 176 Thalassiosira p...
Q6C222       118 --lrFMNMPYSVYVNLDLPETDRNLGTG------NFMIRVSF-------------------ADdlevfrsthrltrdnrk 170 Yarrowia lipoly...
EPB87996     160 ---lRHEQAYDVSVQLHVPTSDINFDLG------NFMVHVEL-------------------QTk---------------- 195 Mucor circinell...
EPB92298     147 --plrHEQVYDVSVQLHVPTSDTNFDIG------NFMIDLDL-------------------NAq---------------- 183 Mucor circinell...
XP_004995916 112 ----RVGQAYDFTVELELPNSRPNRQAG------MFMVSLWLsstkddahashdialhqgeLTa---------------- 165 Salpingoeca ros...
XP_002905330 139 ----VPGVTYDVIVKLTVPESRTNAEVG------VFMVSTTL-------------------YSn---------------- 173 Phytophthora in...
EJK50087     179 navlEPDYKYFFELSLTLPESTANRDIG------VFMISVEL-------------------QSk---------------- 217 Thalassiosira o...
XP_002181511 175 trllQPKQDYYIEIVLDLPESEHNQMLG------MFGVVTEL-------------------YSr---------------- 213 Phaeodactylum t...
XP_003062455 126 arvlDPGTRFDVTATLVVPDAAAAATGAggvdggMFQVYASL-------------------TNe---------------- 170 Micromonas pusi...
XP_001746817  87 ----VPLSPYTGGPTHT-PTSVLSARTG------SFTATCHL-------------------LYsleqafelpteatplgt 136 Monosiga brevic...
XP_002286702 177 esilIQGQHYFLEVVLILPESEINKQVG------VFMLTVDL-------------------LSd---------------- 215 Thalassiosira p...
Q6C222       171 rwplthneeyavrpnvgsinkrekrdraeklhkedriitdhqpehhPlpaLFTA-----TRPAILAFQSATMRVMDTLLF 245 Yarrowia lipoly...
EPB87996     196 ----------------------------------------------NgtvLAES-----SRPAILRYQSYTQRILHVMAK 224 Mucor circinell...
EPB92298     184 ----------------------------------------------NgsvILHS-----SRPGILRYQSQTQRIMRVFAK 212 Mucor circinell...
XP_004995916 166 ----------------------------------------------TgnlVEASpgvggSRPAMLPYRPSIVHFLRRILL 199 Salpingoeca ros...
XP_002905330 174 ----------------------------------------------QergLAAS-----ARPVTLHDMPAPVRWMRLAFW 202 Phytophthora in...
EJK50087     218 ----------------------------------------------DrtvLARS-----RQHSMLPYESPLVSTFRKITL 246 Thalassiosira o...
XP_002181511 214 ----------------------------------------------NgtkLALS-----RRSMRIPHESHWISVVRKMAL 242 Phaeodactylum t...
XP_003062455 171 ----------------------------------------------RgdaIANA-----TRPATLKRVNPEVRLLRFVTR 199 Micromonas pusi...
XP_001746817 137 pfpalsgksset-----qqsapptaqpgplapstaivtsqawhlaaTaphIHSI-----RRSAMIPYRSTMVDTLRKALL 206 Monosiga brevic...
XP_002286702 216 ----------------------------------------------KkqlLATS-----IQSSMFPYESRLVGTLRKMTV 244 Thalassiosira p...
Q6C222       246 APLYLTGWKKQEQR--LHVYMASNWHV-PADVEdheFAYAIVELd-----------RTVDIYGAQIEWRVEWTGLRYFMY 311 Yarrowia lipoly...
EPB87996     225 ALPLLIGWTEESQN--INVVLLESYIE-KKATP---ITQAHVTLs----------sSKLQVYDAHISVIADFRGLRYYMY 288 Mucor circinell...
EPB92298     213 ALPLLVGLTEESQV--ITIKLIDDFME-LKSRA---VDSVFVAIs----------dPRIQIYDAKLLILANFKGLRYYMY 276 Mucor circinell...
XP_004995916 200 AGPYLLGLVDDTQT--VTVPVMQHVHV--KGRG---LHWASVSLs----------sSKLQVTRATLMARTRMQGMTYWMY 262 Salpingoeca ros...
XP_002905330 203 LMPYALGFTEPAQT--LRVTAINGYQE-STEYP---LTRVDIELn----------tPKLQVYSAKLTVIAQLTGLRYLMY 266 Phytophthora in...
EJK50087     247 LAPLMSGLLSETRT--VHLICFDSYVEiDTQRP---LQFIDVRLevpysasfpatsRTIQIHSAQVKFGKEMNKLQLLLR 321 Thalassiosira o...
XP_002181511 243 LAPLLIGAIEETRT--VTVPSFRHIVE-SLDLP---LKYILVQVvmprd--pilasKTVEITGGEIWIGKELNSVQEIMR 314 Phaeodactylum t...
XP_003062455 200 WPLYALGLMEETQTqwIRLPMFRGVSE-DKSSP---FTSVVVVVkprag---vpasALPIIYAAHADVHVEMNALTRAIR 272 Micromonas pusi...
XP_001746817 207 IVPLTLGLLTESDT--VFIPLFEHFVD-DLEAP---VQYARIEVs----------aPRLQVQSARLIAKANMKGMAYWMY 270 Monosiga brevic...
XP_002286702 245 LLPLVFGMISETRA--ISLLCFDNYVD-ANIERs--LSFVEVSLgvaqpasfpatsQTIQILSAELRYGKEMNTIQIFCR 319 Thalassiosira p...
Q6C222       312 HHRALAFLLGTAVL 325 Yarrowia lipolytica
EPB87996     289 HRRVSTAFAFIALF 302 Mucor circinelloides f. circinelloides 1006PhL
EPB92298     277 FHSILTALAFICTF 290 Mucor circinelloides f. circinelloides 1006PhL
XP_004995916 263 HWFLSSFVVGTLMl 276 Salpingoeca rosetta
XP_002905330 267 HWAVPTAILFILni 280 Phytophthora infestans T30-4
EJK50087     322 QWKYTFFVVGTITI 335 Thalassiosira oceanica
XP_002181511 315 HWFYTCATLGTAVF 328 Phaeodactylum tricornutum CCAP 1055/1
XP_003062455 273 SYPASSFVLMSIAV 286 Micromonas pusilla CCMP1545
XP_001746817 271 HWYISSFFVGVNai 284 Monosiga brevicollis MX1
XP_002286702 320 NWRYLCAVVGVVVI 333 Thalassiosira pseudonana CCMP1335
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