4UM9


Conserved Protein Domain Family
Integrin_beta

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pfam00362: Integrin_beta (this model, PSSM-Id:278776 is obsolete and has been replaced by 459781)
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Integrin, beta chain
Integrins have been found in animals and their homologues have also been found in cyanobacteria, probably due to horizontal gene transfer. The sequences repeats have been trimmed due to an overlap with EGF.
Statistics
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PSSM-Id: 278776
Aligned: 132 rows
Threshold Bit Score: 400.75
Created: 11-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4UM9_B        30 TCEDCLLIgPQCAWCAQENFTHps-gvGERCDTPAnllAKGCQLNfIE--N-PV--S--QV-EILKNKP---LSvgrqKn 97  human
Q16TB6        33 TCVECLDAdYDCAWCTDENYGm----yKHRCMTFDdlvASNCSKSqIE--T-NDyfS--KL-EVEENRP---LL----D- 94  yellow fever mo...
Q7PME7        38 NCIECLDAdKDCAWCTDELYDm----rKSRCMTKHellESKCNALkIE--T-NDdyS--FL-QIGKNEP---HR----D- 99  Anopheles gambi...
EFN82868      39 SCENCLEAsSACAWCSDWTYSNst-hgKPRCNVPErlrAFGCPAAeIR--TaPP--G--SL-ELLANED---FQ----Dv 103 Jerdon's jumpin...
XP_001845473  33 TCIECLDTdYACAWCTDESYGMy----KSRCMTLDdlrANNCSESgIEtnF-NF--S--KL-DIVQNDPprdFD----Re 98  southern house ...
XP_003250860  37 TCENCLQAsSSCAWCSDWFYSNst-igRPRCNVPErlkEFGCSPEkIH--TtPL--E--SM-TLLEDSD---FQ----Dm 101 honey bee
ETN59660      40 nyyDCLDAdEQCAWCTDELYEMr----KYRCMHEEkllASNCSASkIL--T-ND--NyqFI-ETLLNEP---HR----Df 102 Anopheles darlingi
CBY83831      36 SCSECMGIrPACSWCSADEFDDtkegpGFRCAPSSvllARGCPQSsIE--D-VE--S--VL--LDHGVP---LDq---As 100 Schistosoma man...
EKC36497      24 rCGDCL-InDGCGWCKDSEFSFp------RCAPINqltDNGC--VaVI--K-RK--E--HVvQLLQNDE---FS----Dg 80  Pacific oyster
EHJ74616      27 TCHNCIRDaNKCVWCDSHKFNDt------KCKSAAeqlENWCPHT-II--N-PK--S--VV-KVITNND---FS----Se 84  monarch butterfly
4UM9_B        98 --S--S-----D--IVQIAPQSLILKLRPGGA-QTLQVHVRQTEDYPVDLYYLMDLSASMDDDLNTIKELGSRLSKEMSK 165 human
Q16TB6        95 -----YdreklG--ATQIRPQRLKIHLGKLES-HSFKFTYKPAKNYPLDLYYLMDLTWSMKDDRDTLINMGDQLAKALAN 166 yellow fever mo...
Q7PME7       100 -----FdsqqlE--AVQIMPQKMNLRLGKLGS-RTISFKYKPAKNYPLDMYYLMDLTWSMRDDKATLESMGSQLALALAN 171 Anopheles gambi...
EFN82868     104 --S--N-----DraPVQLRPQRLRLRIRPHTS-QELTLQYRPAKNYPLDLYYLMDLTWSMKDDKETLVGLGCRMANTLGT 173 Jerdon's jumpin...
XP_001845473  99 --R--L-----E--AVQISPQRIKMKLG------------KPAKHYPLDLYYLMDLTWSMKDDRDTLVNMGDQLAKALAN 155 southern house ...
XP_003250860 102 eaD--H-----T--PIQLRPQRVNIRIPPYSK-MTIPIRYRLAKNYPLDLYYLMDLTWSMKDDKETLVSLGGDMSRRIGK 171 honey bee
ETN59660     103 deK--M-----Q--AIQISPQKVRFVLGKLAA-RTVTVTYKPAKNYPLDMYYLMDLTWSMRDDKANLEKMGSELALALAN 172 Anopheles darlingi
CBY83831     101 --L--T-----E--DIQLTPRSQSVKVRPGGT-MMVNFTFQSISDYPVDLYFLTDLSYTMIDDLETVSRLTNDIVLTMRN 168 Schistosoma man...
EKC36497      81 --GpgL-----E--PVQIKPQRIKIRLTPNSQlRNVMVFYKIAKNFPLDLYFLNDPSYTMRQLTSSLNLLANDIANDIAT 151 Pacific oyster
EHJ74616      85 --R--G-----K--VIHMKPQQIQINIRPGDV-IDFDFSFRKAQNYPVDLYFLLDGSASMASVKNEIVKQTESIYQMMKS 152 monarch butterfly
4UM9_B       166 LTSNFRLGFGSFVEKPVSPFVKTTPEEIANPCSSip---yfCLPTFGFKHILPLTNDAERFNEIVKNQKISANIDTPEGG 242 human
Q16TB6       167 LTENYRLGFGSFIDKPIMPFIQTEEDRVRNPCSTer---dvCEPTYGFRHRLEITKNIDRFIEKLKTSNVSANLDNLEGG 243 yellow fever mo...
Q7PME7       172 LTANYQLGFGSFADKPAFPFIQSEPHRLQNPCYSen---dqCEPTYGFKHRLKITRDIDSFIAQVKESNVTGNVDNLEAG 248 Anopheles gambi...
EFN82868     174 FTTNFRLGFGSYADKPLMPYIF--PGHEENPCKSeh---afCTPLYSFWHHLELTDNIPRFIHEVNYSSVTGNVDNLEGG 248 Jerdon's jumpin...
XP_001845473 156 LTENYRLGFGSFIDKPIMPFMQTEAHRQANPCISer---evCEPTYGFRHRLQITKNTDKFIEKLKTSNVSANLDNLEGG 232 southern house ...
XP_003250860 172 FTNKYRLGFGSYADKPVMPYI--LPGHEKNPCVSeh---avCSSIYSYWHHLRLTDDIQRFITKVNNSLVTGNADNLEGA 246 honey bee
ETN59660     173 LTANYRLGFGSFADKPAMPFIQSEPHRLANPCYSen---eqCEPTYGFRHRLRISSDIDSFIEQVKQSNVTGNIDNLEAG 249 Anopheles darlingi
CBY83831     169 VTKKLQMGFGAFVDKPVFPFVVPTPEYLRNPCLNvgtknlhCDPPFLYKHILSLTDNFEEFREKTKVARPSGNLDSPEGG 248 Schistosoma man...
EKC36497     152 LTTDFTFGLGTSMDKVVSPFTRQDPKYLATPCGTts---ipCDFPYSFIHRQSLTNDITAFTNAVRGVNTTGNQDIVEGL 228 Pacific oyster
EHJ74616     153 MTDNVYLGMGSFVDKNLLPFTNVl----------------nSTNTYSFRNRLKLINDPEAFKKTINDTAFGYNYDEQEGT 216 monarch butterfly
4UM9_B       243 FDAIMQAAVCKEKIGWRNDSLHLLVFVSDADSHFGMDSKLAGIVCPNDGLCHL-------DSKNEYSM---STVLEYPTI 312 human
Q16TB6       244 LDALMQVLVCDDRIGWGKNTRKIVILATNGLMHMAGDGKLAGITERNDKECHL-------SAEGEYTG---TLTYDYPSL 313 yellow fever mo...
Q7PME7       249 LDALMQVLVCEKQIGWGSNTRKIVIVATDGWLHMAGDGLLAGIVEENDKQCHL-------DSDGNFVD---ALKYDYPSL 318 Anopheles gambi...
EFN82868     249 LDGVVQAIVCTQQVGWAHQARKLMLLATDGFLHFAGEGKLGGVVHRPDFQCHV-------DENGQYSL---AKEYDYPSL 318 Jerdon's jumpin...
XP_001845473 233 LDALMQVLVCGDRIGWGENTRKIVILATNGYLHMAGDGLLAGITERNDKQCHL-------SQEGEYTG---TLQYDYPSL 302 southern house ...
XP_003250860 247 LDGIVQTIVCTEQVGWEHQARKIILVVTDGHLHFAGDGKLGGIVKRQDFKCHL-------DERQQYFL---ASEFDYASL 316 honey bee
ETN59660     250 LDALMQVLVCEKQIGWGSNTRKIVVIATDSLLHMAGDGLLAGIIRDNDKQCHL-------SDDGNFVQ---ELQYDYPSL 319 Anopheles darlingi
CBY83831     249 MDALLQVARCSEAIGWRAGARKIVLFASDGGFHLAGDGRIAGLILPPPTTCQLtyqadrfNSSLKYLGwhnSDQTDYPSV 328 Schistosoma man...
EKC36497     229 LDGLMQVMVCGDRIGWRKKSRRMVIYATDINFHHAGDGRVAGILQPNDGLCHL-------DSNGKYTM---AEVQDYPSV 298 Pacific oyster
EHJ74616     217 LDALAQVIVCKEQIGWREESRKIILVFTGASFHAASDGIFGGVVEPYDGKCYL-------END-VYSK---ETVMDYPSV 285 monarch butterfly
4UM9_B       313 GQLIDKLVQNNVLLIFAVTQE-----QVHLYENYAKLI-P-G--ATVGLLQKDSGNILQLIISAYEELRSEVELEvL-GD 382 human
Q16TB6       314 EQIYRVLAKSKTAVIFAVTDE-----LKDYYWSMRELM-SeF--ASVGLLQDDSSNILQLVDTGYRDFVKRVEFT-D-DA 383 yellow fever mo...
Q7PME7       319 EQIWRVLLRSKTAVIFAVTEA-----QQAYYRRLSDLM-PeF--TSVGRLQDDSSNIIQLVDEGYREFVKRVEFI-D-NS 388 Anopheles gambi...
EFN82868     319 AEVSRLLQERKVNLIFAVTED-----RRHEYELIADLLkE-H--ARVATLTRNSSNILEIIESSYHDIVSKVVLR-D-NS 388 Jerdon's jumpin...
XP_001845473 303 EEIYRVLVKSKTAVIFAVTDE-----LQDYYRSLNDLMsE-F--TSVGALQDDSSNILQLVNTGYRDFVRKVEFT-D-NS 372 southern house ...
XP_003250860 317 AELSRLLQEHKINLIFAVTRD-----LLDEYEETVKLLrE-K--ARVAILTSDSSNILDIIESSYHQITSKVILK-D-NS 386 honey bee
ETN59660     320 EQIWRVLEKTKTAVIFAVTDE-----KQTYYKRLSALV-PeF--TSVGQLQDDSSNIIQLVKDGYREFVNRIMFT-D-DA 389 Anopheles darlingi
CBY83831     329 GEIAQVLTEADISVIFAVDSK-----LHGLYTKLAEFL-P-S--AAVGILTDSSTNIVRLLRDNYDKIVNKAELMaT-YD 398 Schistosoma man...
EKC36497     299 GQILQKARENNINIIFVIGGAenefiRNNYYDKFATYL-P-GgfNNASELTTDGSNILNIVGSSYRRLRETVKLVmT-KV 375 Pacific oyster
EHJ74616     286 GIINKLASEDEKIIIFAIDEE-----AKNIYKSLTNFI-T-G--SKVTKYGGD--LIANMLKTVYEEISQNLKLKvNmDA 354 monarch butterfly
4UM9_B       383 TEGLNLSFTAI--CNN-G-TL-FQ-H-QKKCSHMKVGDTASFSVTV--NIPHCe----R--RSRHIIIKPVGL-G-D--- 442 human
Q16TB6       384 PAYIQISYKTD--CGG-IyKT-PQ-P-TSKCDNIEIGKEYDFFVEV--RLLEYpn-raE--SNLTVKIEETLL-SnE--- 448 yellow fever mo...
Q7PME7       389 PDYMQLRYTTD--CAG-LyRE-PQ-P-INRCDNIEIGKEYKFNVEI--HLLEYpkdpsI--TNVTVRIEEKLI-SnE--- 454 Anopheles gambi...
EFN82868     389 TGPLRLEYFSA--CGG-Q-TA-AEsS-TSECDGIQEGHVYEFKVVI--SVDECpr--nEslWKQTVVIDDALA-S-Ea-s 455 Jerdon's jumpin...
XP_001845473 373 PSYLEISYKTD--CGG-M-YT-KP-QlTSKCDNIEIGKEYEFFVEV--RLINYpp--eSv-SNLTVKIEETLI-S-Negv 439 southern house ...
XP_003250860 387 SSPLKMKYFSN--CGK-G-NVsGW-N-IAECDGIEDGKVYDFQVVL--SFDECpk--dEnlWKQTVIIEDALA-S-E--- 451 honey bee
ETN59660     390 PDYIQLKYLTD--CGGmY-ET-PQ-P-IYRCSNIETGKEYNIDVEV--RLLDYpkdpsI--SELTIHIEEKLIsN-E--- 455 Anopheles darlingi
CBY83831     399 ADYLEVQVFSK--CND-E-NE-FS-K-KTVCNDHPVGGKIGYQISI--KAKRCfe--gV----KKVTLKMVAL-E-D--- 458 Schistosoma man...
EKC36497     376 PEELDVEIYSN--CRT-G-RI-LD-K-TNNCTGLTLEKWTNFTLFLfsNMTTCp---dQ--RTVNFTIFPEGL-E-E--- 438 Pacific oyster
EHJ74616     355 EHRKNFEFFFNpdCYN----A-YR-Q-YEDCEVVHYEEK-HFTGTI--KLLSYie--nD---SVKMDIVFEGI-K-E--- 414 monarch butterfly
4UM9_B       443 A--LELLVSPE--CNC 454 human
Q16TB6       449 S--VELEIYIReaCQC 462 yellow fever mosquito
Q7PME7       455 A--VELDIDLRtsCNC 468 Anopheles gambiae str. PEST
EFN82868     456 E--VQIDVELL--CGC 467 Jerdon's jumping ant
XP_001845473 440 E--LEVDLRQA--CQC 451 southern house mosquito
XP_003250860 452 AskIIIDIELF--CGC 465 honey bee
ETN59660     456 A--IELQIQLR--SNC 467 Anopheles darlingi
CBY83831     459 Q--AVLGVQTA--CSC 470 Schistosoma mansoni
EKC36497     439 R--VEIEVEHV--CDC 450 Pacific oyster
EHJ74616     415 K--IELDISIIkrCDC 428 monarch butterfly
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