Conserved Protein Domain Family
PHD2_PHF12_Rco1

?
cd15534: PHD2_PHF12_Rco1 
PHD finger 2 found in PHD finger protein 12 (PHF12), yeast Rco1, and similar proteins
PHF12, also termed PHD factor 1 (Pf1), is a plant homeodomain (PHD) zinc finger-containing protein that bridges the transducin-like enhancer of split (TLE) corepressor to the mSin3A-histone deacetylase (HDAC)-complex, and further represses transcription at targeted genes. PHF12 also interacts with MRG15 (mortality factor-related genes on chromosome 15), a member of the mortality factor (MORF) family of proteins implicated in regulating cellular senescence. PHF12 contains two plant homeodomain (PHD) zinc fingers followed by a polybasic region. The PHD fingers function downstream of phosphoinositide signaling triggered by the interaction between polybasic regions and phosphoinositides. This subfamily also includes yeast transcriptional regulatory protein Rco1 and similar proteins. Rco1 is a component of the Rpd3S histone deacetylase complex that plays an important role at actively transcribed genes. Rco1 contains two PHD fingers, which are required for the methylation of histone H3 lysine 36 (H3K36) nucleosome recognition by Rpd3S. This model corresponds to the second PHD finger.
Statistics
?
PSSM-Id: 277009
Aligned: 26 rows
Threshold Bit Score: 63.9047
Created: 8-Aug-2013
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
Zn binding siteputative
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C [CH] H [CH] C [CH]Click to see conserved feature residue pattern help
Evidence:

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #                   #  #    #  #                       #  #
Q96QT6        273 VCFtCNRSCrv--------aPLIQCDYCPLLFHMDCLEPPLtamp---------lgrWMCPNH 318  human
Q04779        416 ICYkCNQTRlgswshpensrLIMTCDYCQTPWHLDCVPRASfknl---------gskWKCPLH 469  Saccharomyces cerevisiae S288c
CDJ82848      194 PCViCEGIGee--------sPKIQCDFCKYVYHVDCLQFPLcspp---------seaWMCPNH 239  barber pole worm
NP_499397     220 VCAeCNLKDdw--------tRMLKCDFCDLIWHQKCVTPPLihvr--------ayfyWMCPRH 266  Caenorhabditis elegans
EJW80975       58 VCHlCASRNen--------sTMIQCDFCSLCYHLDCLTPPLpsvp---------kdkWMCPAH 103  Wuchereria bancrofti
XP_003067351  655 FCAkCHRANldg------erQIMKCDHCSLYWHLDCLDENYthpplqfsgssnprhyWKCPNH 711  Coccidioides posadasii C735 de...
KCV73314      776 PCYaCRDFRpd--------rLHLVCDACGSRWHAECLPPLAtlps--------dttrWRCPLH 822  Fonticula alba
XP_004987551  324 VCFrCVQQCrp--------dNSAKCCECNTMFHYNCVSPPLthvg--------atqpWRCPLH 370  Salpingoeca sp. ATCC50818
EGU12410      263 ICYnCDEAAsav-----krrRIISCDFCDQSWHLDCLDPPMtgmpp-------ptrkWMCPLH 313  Rhodotorula glutinis ATCC 204091
Q09698        408 LCFrCHKSAlv-------sqSILACDYCNSYWHPDCLNPPLatlps-------nlrkWKCPNH 456  Schizosaccharomyces pombe 972h-

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap