Conserved Protein Domain Family
pol2

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TIGR00592: pol2 
DNA polymerase (pol2)
All proteins in this superfamily for which functions are known are DNA polymerases.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 273159
Aligned: 7 rows
Threshold Bit Score: 1459.89
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAB24152   38 KVEDqVDDVYDVVDEREYAKR-AQEKYGDDWIEED-GTGYAEDLRDFFEDedeysdgEEDRKDLKKKkGVAPNSKKRPRE 115  fruit fly
P33609     56 EVED-LTSVYEEVDEEQYSKL-VQARQDDDWIVDDdGIGYVEDGREIFDDd-----lEDDALDTCGK-GSDGKAHRKDRK 127  house mouse
P09884     50 EVED-FTGVYEEVDEEQYSKL-VQARQDDDWIVDDdGIGYVEDGREIFDDd-----lEDDALDADEK-GKDGKARNKDKR 121  human
P13382     29 DESD-GDRIYDEIDEKEYRARkRQELLHDDFVVDDdGVGYVDRGVEEDWR-------EVDNSSSDEDtGNLASKDSKRKK 100  Saccharomyces cer...
P30320      5 TFFP-TDWRSEDVEPDK-----GEPYFRINIFGKTmDGKTVCVRAKFTPF----------FLLETPEsWSAARTNLFITE 68   Paramecium bursar...
AAA67131    1 MILD-ADYITED------------GKPIIRIFKKEnGEFKVEYDRNFRPY----------IYALLKDdSQIDEVRKITAE 57   Pyrococcus sp.
AAA72101    1 MILD-TDYITKD------------GKPIIRIFKKEnGEFKIELDPHFQPY----------IYALLKDdSAIEEIKAIKGE 57   Thermococcus lito...
AAB24152  116 NEKP-----VTGKASIKNLFSNAVPKKKMDVKTSVKDDDdILADILGEIKeep-aatSEKAEkvIAPAKISVTSRKFDAA 189  fruit fly
P33609    128 DVKKp---sVTKPNNIKAMFIASAGKKTTDKAVDLSKDD-LLGDILQDLN-------TETAQ--ITPPPVLIPKKKRSTG 194  house mouse
P09884    122 NVKKl---aVTKPNNIKSMFIACAGKKTADKAVDLSKDG-LLGDILQDLN-------TETPQ--ITPPPVMILKKKRSIG 188  human
P13382    101 NIKRekdhqITDMLRTQHSKSTLLAHAKKSQKKSIPIDN--FDDILGEFEsgevekpNILLPskLRENLNSSPTSEFKSS 178  Saccharomyces cer...
P30320     69 TAMK-----------YDAIRPSCLP---TKRKNMWGYDGgKMRPMVQFVFk------TLSQMrkAKYRLKNEYQIYESSV 128  Paramecium bursar...
AAA67131   58 RHG-------------KIVRIIDAE---KVRKKFLG-------------------------------RPIEVWRLYFEHP 90   Pyrococcus sp.
AAA72101   58 RHG-------------KTVRVLDAV---KVRKKFLG-------------------------------REVEVWKLIFEHP 90   Thermococcus lito...
AAB24152  190 AAkeyMNSFLNNIKVQEQERKKAEASSDNemlERILKPkaaVPnTKVAFFSSPTIKKEpMPEKTPAKKATEdpFSDNemD 269  fruit fly
P33609    195 AL---LNPFSVHTPKAIPSGKPASPVLRN---EPLLTP---IP-LKRAELAGELAQPE-CPEDEQELGVME--FEDG--D 259  house mouse
P09884    189 AS---PNPFSVHTATAVPSGKIASPVSRK---EPPLTP---VP-LKRAEFAGDDVQVE-STEEEQESGAME--FEDG--D 253  human
P13382    179 IKrvnGNDESSHDAGISKKVKIDPDSSTDkylEIESSP---LKlQSRKLRYANDVQDLlDDVENSPVVATKrqNVLQdtL 255  Saccharomyces cer...
P30320    129 DPiirIFHLRNINPADWMHVSKAFPVETRisnSDIEVEt-------SFQHL-GPSDLKeVPPLIIASWDIEtySKDRkf- 199  Paramecium bursar...
AAA67131   91 QDvpaIRDKIREHSAVIDIFEYDIPFAKRyliDKGLIP------------------MEgDEELKLLAFDIEtlYHe---- 148  Pyrococcus sp.
AAA72101   91 QDvpaMRGKIREHPAVVDIYEYDIPFAKRyliDKGLIP------------------MEgDEELKLLAFDIEtfYHe---- 148  Thermococcus lito...
AAB24152  270 FsclddDENqFDVEKTQQTe-KVSQTKTAAEKTSQSKVAEKSAPKKETTgSPKESESEDISrlLnnWEsICQMDDD---- 344  fruit fly
P33609    260 F-----DES-MDTEKVDEK--PVTAKTWDQETEPVERVEHEADPERGTT-SYLENFLPDVS--C--WD-IDQDDESi--p 323  house mouse
P09884    254 F-----DEP-MEVEEVDLE--PMAAKAWDKESEPAEEVKQEADSGKGTV-SYLGSFLPDVS--C--WD-IDQEGDSsfsv 319  human
P13382    256 LanppsAQSlADEEDDEDSdeDIILKRRTMRSVTTTRRVNIDSRSNPSTsPFVTAPGTPIGikGltPSkSLQSNTDv--- 332  Saccharomyces cer...
P30320    200 ----plAENpADYCIQIATt-----FQKYGEPEPYRRVVVCYKQTASVEgVEIISCAEEADvmNtwMTiLQDEITD---- 266  Paramecium bursar...
AAA67131  149 -----gEEFaKGPIIMIS-----------YADEEEAKVITWKKIDLP----YVEVVSSEREmiKrfLKvIREKDPD---- 204  Pyrococcus sp.
AAA72101  149 -----gDEFgKGEIIMIS-----------YADEEEARVITWKNIDLP----YVDVVSNEREmiKrfVQvVKEKDPD---- 204  Thermococcus lito...
AAB24152  345 FEKSVLTTEQDSTISSD-QQLRFWYW-EAYEDPVKMPGEVFLFGR----TAD-GKSVCLRVQNINRVLYLLPRQFLLDPI 417  fruit fly
P33609    324 QEVQVDSSNLPLVKGADdEQVFQFYWlDAYEDPYNQPGVVFLFGKvwieSVKtHVSCCVMVKNIERTLYFLPREMKFDLN 403  house mouse
P09884    320 QEVQVDSSHLPLVKGADeEQVFHFYWlDAYEDQYNQPGVVFLFGKvwieSAEtHVSCCVMVKNIERTLYFLPREMKIDLN 399  human
P13382    333 ATLAVNVKKEDVVDPET--DTFQMFW----LDYCEVNNTLILFGKvk-lKDDnCVSAMVQINGLCRELFFLPREGKTP-- 403  Saccharomyces cer...
P30320    267 VSIGYNLWQYDLRYIHGrSMMCVDDItGEDNVRLKNLGRLLVGGGev-----iERDLSSNAFGQN-KFFLLDMPGVMQID 340  Paramecium bursar...
AAA67131  205 VIITYNGDSFDLPYLVKr---------------AEKLGIKLPLGRd-------GSEPKMQRLG---DMTAVEIKGRIHFD 259  Pyrococcus sp.
AAA72101  205 VIITYNGDNFDLPYLIKr---------------AEKLGVRLVLGRdk-----eHPEPKIQRMG---DSFAVEIKGRIHFD 261  Thermococcus lito...
AAB24152  418 SKEPTKQKVTVADIYKEFDSEVANQLKLEFFRSRKVTKSFAHHAIg--iEVPQSCDYLEVHYDg---kKPLPNLSADKKY 492  fruit fly
P33609    404 TGKETAIPVTMKDVYEEFDSKISAKYKIMKFKSKIVEKNYAFEIP----DVPEKSEYLEVRYS-----AEVPQLPQNLKG 474  house mouse
P09884    400 TGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIP----DVPEKSEYLEVKYS-----AEMPQLPQDLKG 470  human
P13382    404 -----------TDIHEEIIPLLMDKYGLDNIRAKPQKMKYSFELP----DIPSESDYLKVLLPyqtpkSSRDTIPSDLSS 468  Saccharomyces cer...
P30320    341 LLQWFRKNRNLESYSLNNVSKLYLGDQKNDLPAMQIFEKFEGGADdraiIAAYARKDTDLPLKllkkmAILEDITEMANA 420  Paramecium bursar...
AAA67131  260 LYHVIRRTINLPTYTLEAVYEAIFGKPKEKVYAHEIAEAWETGKGle-rVAKYSMEDAKVTYElgrefFPMEAQLSRLVG 338  Pyrococcus sp.
AAA72101  262 LFPVVRRTINLPTYTLEAVYEAVLGKTKSKLGAEEIAAIWETEESmk-kLAQYSMEDARATYElgkefFPMEAELAKLIG 340  Thermococcus lito...
AAB24152  493 NSIAHIFGATTNALERFLLDRKIKGPCWLQVTGFKVSPTP-MSWCNTEVTLTEPKNVELVQDKGkpapPPPLTLLSLNVR 571  fruit fly
P33609    475 ETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLNQP-ISWCKFEVMALKPDLVNVIKDVS----PPPLVVMSFSMK 549  house mouse
P09884    471 ETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQP-VSWCKVEAMALKPDLVNVIKDVS----PPPLVVMAFSMK 545  human
P13382    469 DTFYHVFGGNSNIFESFVIQNRIMGPCWLDIKGADFNSIRnASHCAVEVSVDKPQNITPTTTKT----MPNLRCLSLSIQ 544  Saccharomyces cer...
P30320    421 VKVPVDYINFRGQQVRAFSCLVGKAR-QMNYAIPDDKMWTvD--GKYEGATVLDA--KKGAYFTs------IAALDFA-- 487  Paramecium bursar...
AAA67131  339 QPLWDVSRSSTGNLVEWYLLRKAYERNELAPNKPDEREYErRLRESYAGGYVKEP--EKGLWEG-------LVSLDFR-- 407  Pyrococcus sp.
AAA72101  341 QSVWDVSRSSTGNLVEWYLLRVAYARNELAPNKPDEEEYKrRLRTTYLGGYVKEP--EKGLWEN-------IIYLDFR-- 409  Thermococcus lito...
AAB24152  572 -SMNPKTSRNEICMtISMLTHNRFHIDRPAPQPAFNRHMCALTRP-AVVSWPLDLNfEMAKYKSTTVHKHDSERALSVWF 649  fruit fly
P33609    550 tMQNVQNHQHEIIA-MAALVHHSFALDKAPPEPPFQTHFCVVSKP-KDCIFPCDFK-EVISKKNMKVEIAATERTLIGFF 626  house mouse
P09884    546 tMQNAKNHQNEIIA-MAALVHHSFALDKAAPKPPFQSHFCVVSKP-KDCIFPYAFK-EVIEKKNVKVEVAATERTLLGFF 622  human
P13382    545 tLMNPKENKQEIVS-ITLSAYRNISLDSPIPENIKPDDLCTLVRPpQSTSFPLGLAaLAKQKLPGRVRLFNNEKAMLSCF 623  Saccharomyces cer...
P30320    488 -SLYPSIIRAHNMS--PETLVMDKRFENLPGIEYYEIETGLGTFK---YPQKNDETgEGQGVVPALLDDLAKFRKQAKKH 561  Paramecium bursar...
AAA67131  408 -SLYPSIIITHNVS--PDTLNRE-------GCREYDVAPEVGHKF---CK-------DFPGFIPSLLKRLLDERQEIKRK 467  Pyrococcus sp.
AAA72101  410 -SLYPSIIVTHNVS--PDTLEKE-------GCKNYDVAPIVGYRF---CK-------DFPGFIPSILGDLIAMRQDIKKK 469  Thermococcus lito...
AAB24152  650 LAQYQKI-DADLIVTFDSMDCQLNVITDQIVALKIPQWSRMG-RLRLS--QSFGKR------LLEH--FVGRMVCDVKRS 717  fruit fly
P33609    627 LAKVHKI-DPDILVGHNICSFELEVLLQRINECKVPYWSKIG-RLRRSnmPKLGSRs----gFGERnaTCGRMICDVEIS 700  house mouse
P09884    623 LAKVHKI-DPDIIVGHNIYGFELEVLLQRINVCKAPHWSKIG-RLKRSnmPKLGGRs----gFGERnaTCGRMICDVEIS 696  human
P13382    624 CAMLKVE-DPDVIIGHRLQNVYLDVLAHRMHDLNIPTFSSIGrRLRRTwpEKFGRGnsnmnhFFISdiCSGRLICDIANE 702  Saccharomyces cer...
P30320    562 MAEAKKNdDEFREALYDAQQRSYKIVMN---------------------------------------------------- 589  Paramecium bursar...
AAA67131  468 MKASK---DPIEKKMLDYRQRAIKILAN---------------------------------------------------- 492  Pyrococcus sp.
AAA72101  470 MKSTI---DPIEKKMLDYRQRAIKLLAN---------------------------------------------------- 494  Thermococcus lito...
AAB24152  718 AEECIR--ARSYDLQTLCKQVLKLkgsERMEVNADDLLEMYE-KGESITKLISLTMQDNSYLLRLMCELNIMPLALQITN 794  fruit fly
P33609    701 AKELIH--CKSYHLSELVQQILKT---ERIVIPTENIRNMYS-ESSYLLYLLEHIWKDARFILQIMCELNVLPLALQITN 774  house mouse
P09884    697 AKELIR--CKSYHLSELVQQILKT---ERVVIPMENIQNMYS-ESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITN 770  human
P13382    703 MGQSLTpkCQSWDLSEMYQVTCEK---EHKPLDIDYQNPQYQnDVNSMTMALQENITNCMISAEVSYRIQLLTLTKQLTN 779  Saccharomyces cer...
P30320        --------------------------------------------------------------------------------      Paramecium bursar...
AAA67131      --------------------------------------------------------------------------------      Pyrococcus sp.
AAA72101      --------------------------------------------------------------------------------      Thermococcus lito...
AAB24152  795 ICGNTMTRTLQGGRSERNEFLLLHAFHEKNYIVPDKKPVSK-RSGAGDTDATLSGad-aTMQTkKKAAYAGGLVLEPMRG 872  fruit fly
P33609    775 IAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKpQQKLGDEDEEIDGdtnkYKKGrKKATYAGGLVLDPKVG 854  house mouse
P09884    771 IAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKpQQKLGDEDEEIDGdtnkYKKGrKKAAYAGGLVLDPKVG 850  human
P13382    780 LAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEGNRSrAQKQRQNEENADA----PVNS-KKAKYQGGLVFEPEKG 854  Saccharomyces cer...
P30320        --------------------------------------------------------------------------------      Paramecium bursar...
AAA67131      --------------------------------------------------------------------------------      Pyrococcus sp.
AAA72101      --------------------------------------------------------------------------------      Thermococcus lito...
AAB24152  873 LYEKYVLLMDFNSLYPSIIQEYNICFTTVQ------QPVDAD----ELPTLPDSKTEPGILPLQLKRLVESRKEVKKLMA 942  fruit fly
P33609    855 FYDKFILLLDFNSLYPSIIQEFNICFTTVQrvtsevQKATEDeeqeQIPELPDPNLEMGILPREIRKLVERRKQVKQLMK 934  house mouse
P09884    851 FYDKFILLLDFNSLYPSIIQEFNICFTTVQrvaseaQKVTEDgeqeQIPELPDPSLEMGILPREIRKLVERRKQVKQLMK 930  human
P13382    855 LHKNYVLVMDFNSLYPSIIQEFNICFTTVDr-----NKEDID----ELPSVPPSEVDQGVLPRLLANLVDRRREVKKVMK 925  Saccharomyces cer...
P30320        --------------------------------------------------------------------------------      Paramecium bursar...
AAA67131      --------------------------------------------------------------------------------      Pyrococcus sp.
AAA72101      --------------------------------------------------------------------------------      Thermococcus lito...
AAB24152  943 ApDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKGREILTNTQQLVQKMN--YDVVYGDT--DSL 1018 fruit fly
P33609    935 QqDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKDMVQKMN--LEVIYGDT--DSI 1010 house mouse
P09884    931 QqDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMN--LEVIYGDT--DSI 1006 human
P13382    926 T-ETDPHKRVQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMN--LLVVYGDT--DSV 1000 Saccharomyces cer...
P30320    590 ------------------------SVYGFLGASRGFIPCVPIAASVTATGRKMIEHTAKRVTELLpgSEVIYGDTdsVMI 645  Paramecium bursar...
AAA67131  493 ------------------------SYYGYYGYAKARWYCKECAESVTAWGREYIEFVRKELEEKFg-FKVLYIDT--DGL 545  Pyrococcus sp.
AAA72101  495 ------------------------SYYGYMGYPKARWYSKECAESVTAWGRHYIEMTIREIEEKFg-FKVLYADt--DGF 547  Thermococcus lito...
AAB24152 1019 MINTNITDY---DQVYKIGHNIKQSVNKLYK-QEELDIDGVFGCLLLLKKKKYAAIKLSKDSKGNLRREQEHKGLDIVRR 1094 fruit fly
P33609   1011 MINTNSTNL---EEVFKLGNKVKSEVNKLYK-LLEIDIDAVFKSLLLLKKKKYAALVVEPTSDGNYITKQELKGLDIVRR 1086 house mouse
P09884   1007 MINTNSTNL---EEVFKLGNKVKSEVNKLYK-LLEIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGLDIVRR 1082 human
P13382   1001 MIDTGCDNY---ADAIKIGLGFKRLVNERYR-LLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNGTTVLEVKGLDMKRR 1076 Saccharomyces cer...
P30320    646 RMKLPDDKIhdmDEQFKMAKWLAGEITKDFKaPNDLEFEKIYYPYILYSKKRYAAIKFEDPDEKG---KVDVKGLALVRR 722  Paramecium bursar...
AAA67131  546 YATIPGAKP---EEIKKKALEFVDYINAKLPgLLELEYEGFYVRGFFVTKKKYALIDEEG--------KIITRGLEIVRR 614  Pyrococcus sp.
AAA72101  548 YATIPGEKP---ELIKKKAKEFLNYINSKLPgLLELEYEGFYLRGFFVTKKRYAVIDEEG--------RITTRGLEVVRR 616  Thermococcus lito...
AAB24152 1095 DWSQLAVMVGKAVLDEVLSEKPLEEKLDAVHAQLEKIKTQIAEGVVPLPLFVITKQLTRTPQEYANSASLPHVQVALRMN 1174 fruit fly
P33609   1087 DWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDRKSLPHVHVALWIN 1166 house mouse
P09884   1083 DWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWIN 1162 human
P13382   1077 EFCPLSRDVSIHVLNTILSDKDPEEALQEVYDYLEDIRIKVETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMR 1156 Saccharomyces cer...
P30320    723 DFSPITREILKESLDTILFKKDTPTAVTETVECIRKVLD----NEYPMEKFTMSKTLKTGYKN----ECQPHLHVSNKIF 794  Paramecium bursar...
AAA67131  615 DWSEIAKETQAKVLEAILKHGNVEEAVKIVKEVTEKLSK----YEIPPEKLVIYEQITRPLHEYK--AIGPHVAVAKRLA 688  Pyrococcus sp.
AAA72101  617 DWSEIAKETQAKVLEAILKEGSVEKAVEVVRDVVEKIAK----YRVPLEKLVIHEQITRDLKDYK--AIGPHVAIAKRLA 690  Thermococcus lito...
AAB24152 1175 RERNRLYKKGDMVDYVICL--------DGTTNLAMQRAYHLDELKTSEDkkLQLDTNLLLGHQIHPVVTRMVE 1239 fruit fly
P33609   1167 SQGGRKVKAGDTVSYVICQ--------DGSNLTATQRAYAPEQLQKLDN--LAIDTQYYLAQQIHPVVARICE 1229 house mouse
P09884   1163 SQGGRKVKAGDTVSYVICQ--------DGSNLTASQRAYAPEQLQKQDN--LTIDTQYYLAQQIHPVVARICE 1225 human
P13382   1157 KAG-RVVKAGSVITFVITKqdeidnaaDTPALSVAERAHALNEVMIKSNn-LIPDPQYYLEKQIFAPVERLLE 1227 Saccharomyces cerevisiae...
P30320    795 ERTGFPVPSGARVPFVYIE--------DKKNLDTK-QSFRAEDPTFAQEndLIVDRLFYIEHQLMKPICSLFE 858  Paramecium bursaria Chlo...
AAA67131  689 AR-GVKVRPGMVIGYIVLR--------GDGPISKR-AILAEEFDLRKHK----YDAEYYIENQVLPAVLRILE 747  Pyrococcus sp.
AAA72101  691 AR-GIKVKPGTIISYIVLK--------GSGKISDR-VILLTEYDPRKHK----YDPDYYIENQVLPAVLRILE 749  Thermococcus litoralis
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