1XKE


Conserved Protein Domain Family
RanBD2_RanBP2-like

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cd13177: RanBD2_RanBP2-like 
Click on image for an interactive view with Cn3D
Ran-binding protein 2, Ran binding domain repeat 2
RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include human, chicken, frog, tunicates, sea urchins, ticks, sea anemones, and sponges. RanBD repeat 2 is present in this hierarchy.
Statistics
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PSSM-Id: 269998
Aligned: 3 rows
Threshold Bit Score: 246.112
Created: 23-Jul-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative RAN
Conserved site includes 26 residues -Click on image for an interactive view with Cn3D
Feature 1:putative RAN binding site [polypeptide binding site]
Evidence:
  • Comment:Binding of RanBP to the C-terminus of Ran causes dissociation of Ran-GTP from importin-beta-related transport factors

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                       # ###    ######                # # ## # ###  # #   #   #         #
1XKE_A          2 SGEEDEKVLYSQRVKLFRFDaevSQWKERGLGNLKILKNEvNGKLRMLMRREQVLKVCANHWITtTMNLKPLsgSDRAWM 81   human
CAF92409     1807 TGEEDEEALYSQRVKLFRFDssvSQWKERGVGILKILKNAaNGRLRVLMRREQVLKVCANHWITtTMNLKPLagSDKAWI 1886 spotted green...
XP_002937704 1842 TGEEDEKTLYSQRVKLYRFDatsGQWKERGVGNLKILKNDvNGKLRMLMRREQVLKVCANHWITtTMNLKPLtgSDRSWM 1921 western clawe...
Feature 1          #            #   #                  
1XKE_A         82 WLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQ 118  human
CAF92409     1887 WMANDFSDGDAKLEQLAAKFKSPELAEEFKLKFEDCQ 1923 spotted green pufferfish
XP_002937704 1922 WMANDFSDGDARLEQLAAKFKTPEQAEDFKTKFDECQ 1958 western clawed frog

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