2XMR


Conserved Protein Domain Family
Ndr

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pfam03096: Ndr (this model, PSSM-Id:251726 is obsolete and has been replaced by 397285)
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Ndr family
This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted. The precise molecular and cellular function of members of this family is still unknown. Yet, they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases pfam00561, suggesting that this family may have an enzymatic function (Bateman A pers. obs.).
Statistics
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PSSM-Id: 251726
Aligned: 10 rows
Threshold Bit Score: 390.56
Created: 16-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2XMR_B          3 THSVETPYGSVTFTVYGTPAP--ARPAILTYHDVGLNYKSCFQPLFQF-EDMQEIIQNFVRVHVDAPGMEEGAPVFPLGY 79   human
Q9Z2L9          8 EHDIETPYGLLHVVIRGSPKG--NRPAILTYHDVGLNHKLCFNTLFNL-EDMQEITKHFVVCHVDAPGQQVGASQFPQGY 84   Norway rat
Q544I1         32 EHDIETPHGMVHVTIRGLPKG--NRPVILTYHDIGLNHKSCFNTFFNF-EDMQEITQHFAVCHVDAPGQQEAAPSFPTGY 108  house mouse
Q545R3         34 EQDIETLHGSLHVTLCGTPKG--NRPVILTYHDIGMNHKTCYNPLFNS-EDMQEITQHFAVCHVDAPGQQDGAPSFPVGY 110  house mouse
Q9U283         26 EEKVNTAFGAIKVSIYGDRNDp-KKVPMVTFHDLGLDSESNFQNFFQF-VSIAEFADKFCIYNVNAPGQEMDAQPLPENF 103  Caenorhabditi...
Q9ZUN1         21 EHHVKTCHGSVSVVVYGDQE----KPALITYPDVALNYMSCFQGLFLCpEAVSLLLHNFCIYHISPPGHEFGAAPVCSND 96   thale cress
Q9SP24         21 EHIIQTGCGSVSVTVYGDQQ----KPPLITYPDLGLNHTSCFEGLFISpESASLLLNNFCIYHITPPGHESGAATISKDE 96   common sunflower
O23969         21 EHIIRTGCGSVSVTVCGDQE----KPPLITYPDLALNHMSCFQGLFVSpESASLLLHNFCIYHINPPGHELGAASIGIDD 96   common sunflower
O02485          9 VVVQAQNCGVLHVYVQGNLEErgGKTIILTVHDIGTNHKS-FVRFVNH-PSMATVKEKAIFLHVCVPGQEDNSADFFGD- 85   Caenorhabditi...
XP_016033381   31 YNISTEKCGDLTVIVQGDLSQqeKRAVFITVHDLGCNHNS-FQEFVSS-PCMTEIKERSCFIHVDVPGHADNAEALADGF 108  Drosophila si...
2XMR_B         80 QYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GL 152  human
Q9Z2L9         85 QFPSMEQLATMLPNVVQHFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLMNIDPNGKGWIDWAATKLS-------GL 157  Norway rat
Q544I1        109 QYPTMDELAEMLPPVLTHLSMKSIIGIGVGAGAYILSRFALNHPELVEGLVLINIDPCAKGWIDWAASKLS-------GF 181  house mouse
Q545R3        111 MYPSMDQLAEMLPGVLHQFGLKSVIGMGTGAGAYILTRFALNNPEMVEGLVLMNVNPCAEGWMDWAASKIS-------GW 183  house mouse
Q9U283        104 TYPTMDGIAKTIESVADHFKLNQFIGFGVGVGANVLLRYAAQNQNRVIALVLVNCCSGKSGWVEWGYEKWNtsylrkvGM 183  Caenorhabditi...
Q9ZUN1         97 PSPSVEDLADQILEVLNFFSLEAVMCMGITAGAYILSLFAIKHKERVLGLILISPLCKAPSWSEWFYYKVVsnllyyyGM 176  thale cress
Q9SP24         97 PVLSVVDLCDQILVILNHFRLGSVMCMGAMAGAYILTLFSIKYSERVSGLILVSPICRAASWNEWFYNKFMskllqycGM 176  common sunflower
O23969         97 PVPSIEDLCDQILVVLNYFRLGSVMCMGAMAGAYILTLFSIKYSERVTGLILISPICKAPSWTERFYNKLTsktlyyyGM 176  common sunflower
O02485         86 -FPTLDGIGDDLSAVLDKFEVKSAIAFGEGVGANIICRFAMGHPNRIMGIVLVHCTSTTAGIIEYCKEKVMnmrlensIM 164  Caenorhabditi...
XP_016033381  109 PFPSLQSLGEDLVTVLDYLHVKYVIGLGEGAGANVLARFGLAHPSRVLGLILINATGSAASVVQSFKNKFIswk--sdEV 186  Drosophila si...
2XMR_B        153 TSSIPEMILGHLFSQEELSG----NSE---LIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGDI-------TlRC 218  human
Q9Z2L9        158 TSTLPDTVLSHLFSQEELVN----NTE---LVQSYRQQISSVVNQANLQLFWNMYNSRRDLDINRPGTVpn---akTlRC 227  Norway rat
Q544I1        182 TTNIVDIILAHHFGQEELQA----NLD---LIQTYRLHIAQDINQENLQLFLGSYNGRRDLEIERPILGqndnrlkTlKC 254  house mouse
Q545R3        184 TQALPDMVVSHLFGKEEIHN----NVE---VVHTYRQHILNDMNPSNLHLFISAYNSRRDLEIERPMPGth---tvTlQC 253  house mouse
Q9U283        184 TKFTVDYLMWHHFGRNYDRC----SPD---IVRQYRVFFQHLPNPNSLAEFIESYIQRTPLPISRDGTTg-----vQlKV 251  Caenorhabditi...
Q9ZUN1        177 SGLLKDIFLQRYFSKEARGSsevpERD---VVHECRRLLGERHG-SSLMRFLEAVNRRHDLTDGLKSLK----------C 242  thale cress
Q9SP24        177 CDMFKELLNPRYFSKAGCev---pESE---IVRACRKFLNERDS-INVRRYLQALDRRHDMSKELETLE----------C 239  common sunflower
O23969        177 CDLVKELLIHRYFSKEVCGNpeipESD---MVLACRKLLDERDS-VNVWRYLQAIDSRRDITEELKSLE----------C 242  common sunflower
O02485        165 SDGAWDYLLAHKFGGESKSR----------QE--YLEELKATLNPKNLSKYLVAFTKRTDLSSTIGTKLe--------tV 224  Caenorhabditi...
XP_016033381  187 AQSAESFLMYHKFGHVMEQIvg-eNPDkekIVAEYQKRLHRSLNSKNIGLYVKAFMNRKDLTLKGCKVD----------V 255  Drosophila si...
2XMR_B        219 PVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMGYMA 281  human
Q9Z2L9        228 PVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKYFLQGMGYIA 290  Norway rat
Q544I1        255 STLLVVGDNSPAVEAVVECNSRLDPINTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMGYIP 317  house mouse
Q545R3        254 PALLVVGDNSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAEAFKYFVQGMGYMP 316  house mouse
Q9U283        252 PVLQLVGAGSAHVEDTVEVNTKLDPAHADWIKISDSCGLVLDDRPDAVTESMMLFLQGLGYFP 314  Caenorhabditis elegans
Q9ZUN1        243 RTLIFVGDQSPFHSETLHMVTALDRKYSALVEVQACGSMVTEEQPHAMLIPMEFFFMGFGLYR 305  thale cress
Q9SP24        240 KSIIFVGDKSPFLDDALHMKTILGKRCSAFVEVHPCGSMVTEEQPHAMLIPLELFLKGFGFYR 302  common sunflower
O23969        243 KTIIFVGDSSPFHDEALQIAEKLGTNCSALVEVHACGSMVTQEQPHAMLIPLENFLKGFGLYR 305  common sunflower
O02485        225 DALLVTGSKASHLHTVYTTHKSMNKKKTTLLVVDNV-ADVMQEAPDKLARSLILLCKGCGVLS 286  Caenorhabditis elegans
XP_016033381  256 --ILITGMLSPYASMVEKLHRDVEKERVTILKIERA-GDVLADAPGKVAQSILLFCKGQGLLT 315  Drosophila simulans
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