Conserved Protein Domain Family
RRM2_RBM34
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cd12395: RRM2_RBM34 (this model, PSSM-Id:240841 is obsolete and has been replaced by 409829)
RNA recognition motif 2 in RNA-binding protein 34 (RBM34) and similar proteins
This subfamily corresponds to the RRM2 of RBM34, a putative RNA-binding protein containing two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Although the function of RBM34 remains unclear currently, its RRM domains may participate in mRNA processing. RBM34 may act as an mRNA processing-related protein.
Links
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Statistics
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PSSM-Id: 240841
Aligned: 25 rows
Threshold Bit Score: 100.313
Created: 3-Oct-2011
Updated: 1-Feb-2013
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
P42696       288 SVFVGNLPYk-------------vEESAIEKHFLdcg-------------------simAVRIVRDKmtgiGKGFGYVLF 335  human
17539754     247 AIFVGNLPFe-------------iTEDALITFFSaqig------------------pveAVRIVRDKdtgkGKGFAFVNF 295  Caenorhabditis...
Q08208       280 SIFVGNLDFe-------------eIEESLWKHFEpcg-------------------dieYVRIIRDSktnmGKGFAYVQF 327  Saccharomyces ...
EEC12563     152 SVFVGNLPHe-------------vQDEELWNCFSecg-------------------qvtGVRVIRDRetgmGKGFGFVTF 199  black-legged tick
EEY53230     183 SVFIGNVPFk-------------cTDEQIFQFFLkrlksdd------------epepieNVRLIRDResglGKGFGYLLL 237  Phytophthora i...
XP_001630180 772 SVFIGNLPFvliqnpksfvfvpniEEEPLRELFTtcg-------------------nveSVRLIRDRktgiGKGFGYVLF 832  starlet sea an...
EGN93820     374 SVFVGNLDFa-------------sKEEDLRVFFEgivsaergapdgetdvgeklkswvtRVRIVRDKdtqlGKGFAYVQF 440  Serpula lacrym...
GAA99713     344 TCYVGNLDFa-------------qDEEGIRKVFEdllraerga-------ppagkpyveSVRVVRDRdtglGKGFAYVLL 403  Mixia osmundae...
EDQ86926     223 SIFVGNLPFd-------------aSEEELHGAFDscg-------------------tveGVRIVRDKkyaiGKGFAYVLF 270  Monosiga brevi...
CAK59661     174 TAFVGNLPFd-------------iEEEEVRKAFEeafg------------------einYVRVIKDPqrhvGKGFGYVCF 222  Paramecium tet...

P42696       336 En--tDSVHLALKLnn---------------seLMGRKLRVM 360  human
17539754     296 Kq--dSSVSLALSMet---------------ikMEKRDLRIT 320  Caenorhabditis elegans
Q08208       328 Kd--lQSVNKALLLnekpmksqkqedentkkptKKARKLRVS 367  Saccharomyces cerevisiae S288c
EEC12563     200 Sk--lDAAALALEMsg---------------ihMSGRPIRGG 224  black-legged tick
EEY53230     238 Kt--pALVAKTLTLrn---------------lkMETRELRVQ 262  Phytophthora infestans T30-4
XP_001630180 833 Es--kDAVVFALKMnn---------------aeFKGRKIRVF 857  starlet sea anemone
EGN93820     441 AdrecVDEVLALEEgk---------------lkFAKRKLRVQ 467  Serpula lacrymans var. lacrymans S7.3
GAA99713     404 Hd--eDCVDEMFAIeas-------------kvkVSKRKVRLE 430  Mixia osmundae IAM 14324
EDQ86926     271 El--aESVGLALMKec----------------qVRGRTLRVS 294  Monosiga brevicollis MX1
CAK59661     223 Ne--fQSLKKALQAqs---------------ieIKGREVRIK 247  Paramecium tetraurelia strain d4-2
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