1AM4,1TX4,1GRN


Conserved Protein Domain Family
RhoGAP-p50rhoGAP

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cd04404: RhoGAP-p50rhoGAP 
Click on image for an interactive view with Cn3D
RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Statistics
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PSSM-Id: 239869
Aligned: 11 rows
Threshold Bit Score: 296.942
Created: 12-Apr-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
GTPasecatalytic
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:GTPase interaction site
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                      #                                 
1AM4_A         5 LPNQQFGVSLQHLQEKnpeqepIPIVLRETVAYLQa-hALTTEGIFRRSANTqVVREVQQKYNMGl-------------- 69  human
1TX4_A         4 LPNQQFGVSLQHLQEKnpeqepIPIVLRETVAYLQa-hALTTEGIFRRSANTqVVREVQQKYNMGl-------------- 68  Homo sapiens
1GRN_B         1 LPNQQFGVSLQHLQEKnpeqepIPIVLRETVAYLQa-hALTTEGIFRRSANTqVVREVQQKYNMGl-------------- 65  human
AAH76733     238 LPNQQFGVSLLHLKDKhpendmIPQVVRDTVAYLQe-nALSTEGIFRRSASTqIVREVQQKYNMGv-------------- 302 African clawed ...
AAF49953     269 ATTHQFGVPLKFIVMNspclnsIPPIVRKCVDSLSitgVIDTEGIFRRSGNHsEIMALKERVNRGe-------------- 334 fruit fly
XP_426422    238 LPNQQFGVSLQHLREKspdqspVPLVVRETIAHLQe-hALATEGIFRRSANTqVVKEVQQKYNMGllvkprqdmtrvare 316 chicken
XP_790928    109 LPTQQFGVSLEFLRENgae-eaIPKVVRETVEYLKr-nGLRTEGLFRRCPNAiTVKKVQEMYNRGd-------------- 172 purple urchin
NP_001017781 238 LPFQQFGVSLTTLKHRaadsegIPLVMRDTIGFLLe-nGLQTEGIFRRSANVsLVKDVKAKYNSGe-------------- 302 zebrafish
XP_624226    300 VGTTQFGASLTFIKENnng-dpIPPIVRQCIEFLDmpdALETEGIFRRSANVaVVKELQNRCNQGl-------------- 364 honey bee
XP_416463    228 LPTQQFGVSLQYIKDKnrg-elIPPVMKETVSYLKr-kGLQVEGLFRRSASIqTIKDVQKLYNQGk-------------- 291 chicken
NP_001022390 242 LPTQQFGVPLEFILSHcg--gnIPPIVDQLIEYLEa-hALTMEGVFRKSANIgSIKRLQDRINKGekid----------- 307 nematode
Feature 1                                  #   #                                                 
1AM4_A        70 --------PVDFDqy-neLHLPAVILKTFLRELPEPLLTfDLYPHVVGFlnid-esqRVPATLQVLQT-LPEENYQVLRF 138 human
1TX4_A        69 --------PVDFDqy-naLHLPAVILKTFLRELPEPLLTfDLYPHVVGFlnid-esqRVPATLQVLQT-LPEENYQVLRF 137 Homo sapiens
1GRN_B        66 --------PVDFDqy-neLHLPAVILKTFLRELPEPLLTfDLYPHVVGFlnid-esqRVPATLQVLQT-LPEENYQVLRF 134 human
AAH76733     303 --------QFSFQqy-ddVHLPAVILKTFLRELPEPLLTfNLYSFVVDFskq---eqKIESTHQVLQT-LPKENYEVLQF 369 African clawed ...
AAF49953     335 --------DVDLKsv--nVHVIAGLLKSFLRDLAEPLLTfELYEDVTGFldwp-keeRSRNVTQLIREkLPEENYELFKY 403 fruit fly
XP_426422    317 khltlfsvPVDFQqy-edVHLPAVILKTFLRELPEPLLTfGLYSHIVSFqsve-evnRVDVVRKTLQN-LPEENYHVLRL 393 chicken
XP_790928    173 --------PVNFTdv-gdVHVPALLLKAFFRELPEPIMTfDLYDDILKIhnlqdntdRAEECKSLIHDrLPEENRLIFTY 243 purple urchin
NP_001017781 303 --------EVNFSql-edVHLAAVILKMFLRELPEPLLTyQLYNDIVNFhnvd-iesQAERIQNMLMS-LPDENYASLRF 371 zebrafish
XP_624226    365 --------PIDFQg---dPHIAAVLLKTFLRELDEPLMTyDLYDEITQFqals-kdeRPRRVKILVLEkLPEDNYQVLKY 432 honey bee
XP_416463    292 --------PVNFDdy-hdIHIPAVILKTFLRELPQPLLTfECYDPIVGItsve-sclRVTRCKQIIQG-LPEHNYIVLKY 360 chicken
NP_001022390 308 ----fendPEYKDneyvaSLHASVLLKTFFRSLGEPLTTnRLYPKLAALsevs-kteKSAAVKEFVKL-LPRENYILLKT 381 nematode
Feature 1                            #  ##                      #              
1AM4_A       139 LTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAkda-aiTLKAINPINTFTKFLLDHQGELF 199 human
1TX4_A       138 LTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAkda-aiTLKAINPINTFTKFLLDHQGELF 198 Homo sapiens
1GRN_B       135 LTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAkda-aiTLKAINPINTFTKFLLDHQGELF 195 human
AAH76733     370 LIGFLVQVSSHSQQNKMTTTNLAVVFGPNLLWAkda-amTLKAINPINTFTKFLLDNQRELF 430 African clawed frog
AAF49953     404 IVEFLVRVMDCEDLNKMTSSNLAIVFGPNFLWSrst-stSLEEIAPINAFVDFVLQNHKDIY 464 fruit fly
XP_426422    394 LTAFLVQVSAHSDRNKMTNTNLAVVFGPNLLWAkda-aiTLKAINPINTFTKFLLDHQKELF 454 chicken
XP_790928    244 LMKLLREVSCLSSENQMSDSNLAIVFGPNLVWSrda-saSLSAMAQINSFIATILFNYEHIF 304 purple urchin
NP_001017781 372 LVQFLAQVSAESEINKMTNANLAVVFGPNLLWAqda-smTLSAIGLINNFTRVLLDLHQDVF 432 zebrafish
XP_624226    433 IVQFLSRVMDRSDLNKMTSSNLAVVFGPNLVRAppsrgmSLSAIGPINQFIDFLFTHQDKIF 494 honey bee
XP_416463    361 LICFLHMVSQESIYNRMTASSLACVFGLNLIWPskg-taSLSALVPLNLFTELLIDFYMNIF 421 chicken
NP_001022390 382 VIKFLTRVAENSKVNLMTANNLSVVFGPNLTWPtdq-evPISQLNNLNNFCYKLIVDYDSVF 442 nematode

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