1QMN,1QLP


Conserved Protein Domain Family
alpha-1-antitrypsin_like

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cd02056: alpha-1-antitrypsin_like (this model, PSSM-Id:239011 is obsolete and has been replaced by 381012)
Click on image for an interactive view with Cn3D
alpha-1-antitrypsin_like. This family contains a variety of different members of clade A of the serpin superfamily. They include the classical serine proteinase inhibitors, alpha-1-antitrypsin and alpha-1-antichymotrypsin, protein C inhibitor, kallistatin, and noninhibitory serpins, like corticosteroid and thyroxin binding globulins. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia.
Statistics
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PSSM-Id: 239011
Aligned: 19 rows
Threshold Bit Score: 483.291
Created: 2-Dec-2004
Updated: 17-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
 
reactive center
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:reactive center loop
Evidence:
  • Structure:1QLP_A; active conformation-loop out; P1-P1' cleavage site: Met-Ser.
    View structure with Cn3D
  • Comment:depending on the conformational state, the RC loop is surface accessible in the active form or buried and inserted as the central beta strand in the inactive form.
  • Citation:PMID 9466920

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
1QMN_A     30 ANVDFAFSLYKQLVlkapdKNVIFSPPSISTALAFLSLGAhntTLTEILKGLKFnltetseaeiHQSFQHLLRTLnqssd 109 human
P05154     44 SRRDFTFDLYRALAsaapsQNIFFSPVSISMSLAMLSLGAgssTKMQILEGLGLnlqkssekelHRGFQQLLQELnqprd 123 human
XP_421344  71 SNTDFAFRFYRQATvqapgKNIFFSPVSVSAAFALLALGSraaTQAQLLEGLAFnltnnreeeiHRGFHHLLLLLnrpgs 150 chicken
BAA36581   69 FNAQFAFEFYRQVAvdhpsENIFFSPVSISTSLALLSLGAkgqTLNQIVEGLDFntteiseediHKGFQHLLHMLndpds 148 African clawed frog
XP_421343  55 SNAEFAFRFYKQVTeaggnKNIFFSPLSLSTAFAMLSLGArsnTLSQLHKCLTFnltemeeqeiHEGFQRLLQLLndsqr 134 chicken
BAB26230   49 SNTRFSFLLYQRLAqenpgQNILFSPVSISTSLAMLSLGArsaTKTQILRTLGFnftwvseptiHMGFEYLVRSLnkchq 128 house mouse
P05543     45 INADFAFNLYRRFTvetpdKNIFFSPVSISAALVMLSFGAccsTQTEIVETLGFnltdtpmveiQHGFQHLICSLnfpkk 124 human
1QLP_A     29 NLAEFAFSLYRQLAhqsnsTNIFFSPVSIATAFAMLSLGTkadTHDEILEGLNFnlteipeaqiHEGFQELLRTLnqpds 108 human
XP_170754 235 TITNFALRLYKELAad-apGNIFFSPVSISTTLALLSLGAqanTSALILEGLGFnltetpeadiHQGFRSLLHTLalpsp 313 human
P29622     54 ANADFAFRFYYLIAsetpgKNIFFSPLSISAAYAMLSLGAcshSRSQILEGLGFnltelsesdvHRGFQHLLHTLnlpgh 133 human
Feature 1                                                                                     
1QMN_A    110 elqlSMGNAMFVKEQLSLLDRFTEDAKrlygseAFATDFQdsaaAKKLINDYVKNGTRGKITDLIkdldSQTMMVLVNYI 189 human
P05154    124 gfqlSLGNALFTDLVVDLQDTFVSAMKtlyladTFPTNFRdsagAMKQINDYVAKQTKGKIVDLLknldSNAVVIMVNYI 203 human
XP_421344 151 qvelSMGNTLFMDKHLKPLTTFLKDIKklykgeIISSNFQnsteAKKEINEHMKNKTHGKINQILkdldPNSLMVLVNYI 230 chicken
BAA36581  149 elqlNSGNALFIRNNLKLIQKFLEDVKniygseAFSTDFQnaeeAKKQINSYVEKKTHGKITDLLssvdESTALILINYI 228 African clawed frog
XP_421343 135 diqlNMGNTLFIDERLKLQQKFLDDVTnfyyseAVSMDFQnsehAKEEINNYIKAKTHGKFLDLLdsigKDVVMILTNYV 214 chicken
BAB26230  129 grelRMGSVLFIRKELQLQATFLDRVKklygakVFSEDFSnaatAQAQINSYVEKETKGKVVDVIqdldSQTAMVLVNHI 208 house mouse
P05543    125 elelQIGNALFIGKHLKPLAKFLNDVKtlyeteVFSTDFSnisaAKQEINSHVEMQTKGKVVGLIqdlkPNTIMVLVNYI 204 human
1QLP_A    109 qlqlTTGNGLFLSEGLKLVDKFLEDVKklyhseAFTVNFGdteeAKKQINDYVEKGTQGKIVDLVkeldRDTVFALVNYI 188 human
XP_170754 314 klelKVGNSLFLDKRLKPRQHYLDSIKelygafAFSANFTdsvtTGRQINDYLRRQTYGQVVDCLpefsQDTFMVLANYI 393 human
P29622    134 gletRVGSALFLSHNLKFLAKFLNDTMavyeakLFHTNFYdtvgTIQLINDHVKKETRGKIVDLVselkKDVLMVLVNYI 213 human
Feature 1                                                                                     
1QMN_A    190 FFKAKWEMPFdpqdTHQSRFYLSkk-kwVMVPMMSLHhltIPYFRDeelsCTVVELKYTgnASALFILPDqdkMEEVEAM 268 human
P05154    204 FFKAKWETSFnhkgTQEQDFYVTse-tvVRVPMMSREd-qYHYLLDrnlsCRVVGVPYQgnATALFILPSegkMQQVENG 281 human
XP_421344 231 YFKAYWENPFntkgTHKDYFYVNek-tlVEVKMMIRDs-fYDIYSDkklsCKVVRIPYKgnVSALFILPNegkLKWLEDG 308 chicken
BAA36581  229 YFRGKWDKPFdeelTQDGIFYVDen-tnVTVPMMRRTg-mYNVAFDrklgCTVVQIPYKgnASALFILPDegkLKQVEAA 306 African clawed frog
XP_421343 215 YFKGYWEEPFesynTRDDDFFVDak-hsVKVKMMYKNt-yYNIHRDeqlsCWVVEIPYRgnAAAFFVLPDegsMNQVEDA 292 chicken
BAB26230  209 FFKANWTQPFstanTNKSFPFLLskgttVHVPMMHQTe-sFAFGVDkelgCSILQMDYRgdAVAFFVLPGkgkMRQLEKS 287 house mouse
P05543    205 HFKAQWANPFdpskTEDSSSFLIdktttVQVPMMHQMe-qYYHLVDmelnCTVLQMDYSknALALFVLPKegqMESVEAA 283 human
1QLP_A    189 FFKGKWERPFevkdTEEEDFHVDqv-ttVKVPMMKRLg-mFNIQHCkklsSWVLLMKYLgnATAIFFLPDegkLQHLENE 266 human
XP_170754 394 FFKAKWKHPFsryqTQKQESFFVdertsLQVPMMHQKe-mHRFLYDqdlaCTVLQIEYRgnALALLVLPDpgkMKQVEAA 472 human
P29622    214 YFKALWEKPFissrTTPKDFYVDen-ttVRVPMMLQDqehHWYLHDrylpCSVLRMDYKgdATVFFILPNqgkMREIEEV 292 human
Feature 1                                                                                     
1QMN_A    269 LlpeTLKRWRdslef---reigeLYLPKFSISRDYNLNDILLqLGIEEAFTSKADLSGItgarnLAVSQVVHKAVLDVFE 345 human
P05154    282 LsekTLRKWLkmfkk----rqleLYLPKFSIEGSYQLEKVLPsLGISNVFTSHADLSGIsnhsnIQVSEMVHKAVVEVDE 357 human
XP_421344 309 LkkdTVSKWEksler----rrmeVHIPKVSISGTYDLKKMAMnLGVTDVFSDQADLSGItgksdLKVSRAIHKGLLDIHE 384 chicken
BAA36581  307 LerpTIMSWKklfry----qsvrLSIPKFSISAELDLIEVFKkLGVTDVFSDEADLTGIveeakLKVSKAVHKAVLSIDE 382 African clawed frog
XP_421343 293 LlqdTVSNWSqsleg----rsidLYLPKFSISGSYDVKKLFLkMGVTDMFSNNADFSGVakntlLKVSRAIHKAKLNVNE 368 chicken
BAB26230  288 LsarRLRKWSrslqk----rwikVFIPKFSISASYNLETILPkMGIRDAFNSNADFSGItkthfLQVSKAAHKAVLDVSE 363 house mouse
P05543    284 MsskTLKKWNrllqk----gwvdLFVPKFSISATYDLGATLLkMGIQHAYSENADFSGLtedngLKLSNAAHKAVLHIGE 359 human
1QLP_A    267 LthdIITKFLenedr----rsasLHLPKLSITGTYDLKSVLGqLGITKVFSNGADLSGVteeapLKLSKAVHKAVLTIDE 342 human
XP_170754 473 LqpqTLRKWGqlllp----slldLHLPRFSISGTYNLEDILPqIGLTNILNLEADFSGVtgqlnKTISKVSHKAMVDMSE 548 human
P29622    293 LtpeMLMRWNnllrkrnfykkleLHLPKFSISGSYVLDQILPrLGFTDLFSKWADLSGItkqqkLEASKSFHKATLDVDE 372 human
Feature 1      ###########             ######                   
1QMN_A    346 eGTEASAATAVKItllsalvetrtiVRFNRPFLMIIVPtdtqNIFFMSKV 395 human
P05154    358 sGTRAAAATGTIFtfrsar-lnsqrLVFNRPFLMFIVDn---NILFLGKV 403 human
XP_421344 385 nGTEAAAVTGTEFaphs----vppvIKFNRPFLLLIVDqyteSILFIGKI 430 chicken
BAA36581  383 kGTEAAARTAFEImpmm----lppnIQYNRPFLLTIYDmetkHTLFLGRI 428 African clawed frog
XP_421343 369 nGTEAAAVTMVEMkvfsam-idpleIKFNRPFVMMIFDkitnSILFMGKV 417 chicken
BAB26230  364 eGTEAAAATTTKLivrsrd-tpssiIAFKEPFLILLLDknteSVLFLGKV 412 house mouse
P05543    360 kGTEAAAVPEVELsdqpentflhpiIQIDRSFMLLILErstrSILFLGKV 409 human
1QLP_A    343 kGTEAAGAMFLEAipms----ippeVKFNKPFVFLMIEqntkSPLFMGKV 388 human
XP_170754 549 kGTEAGAASGLLSqppslntmsdphAHFNRPFLLLLWEvttqSLLFLGKV 598 human
P29622    373 aGTEAAAATTFAIkffsaq-tnrhiLRFNRPFLVVIFStstqSVLFLGKV 421 human

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