Conserved Protein Domain Family
COG5511

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COG5511: COG5511 (this model, PSSM-Id:227798 is obsolete and has been replaced by 444262)
Bacteriophage capsid protein [Mobilome: prophages, transposons]
Statistics
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PSSM-Id: 227798
Aligned: 24 rows
Threshold Bit Score: 482.654
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
15830886   3 MSTIPTLLGPDGMTSLREYAGYHGG----GSGFGGQLRAWNPPGESVDAALLPNFTRGNARADDLVRNNGYAAN-AIQLH 77  Escherichia coli O1...
17987529   1 -------------------------------MKRKREAISASDGYAARQIGLDRRPWLKETAAGTMTAICFWKNaGQDKN 49  Brucella melitensis
17545573   1 ----MSLQTRIESLVLRLASEFKTI----HDQVGTLARLSTTDKTSLVSAINELRAQFDKIASAALIDDANAAGtTTTFS 72  Ralstonia solanacearum
17545576   1 MAQKGSPTQVGWFGRIRSLFGQAPVh--eAAGRGRRSLAWRPGNPGAVAALLASGEDLRIKSRDLVRRNAWAQA----GI 74  Ralstonia solanacearum
16764273   5 DKAIGALAPGWGASRLRSRMAIRAY----EAITPTRTHRVKRENRSGDQLIQLAGKSLREQARWFDNNHDLVIG-ALDKM 79  Salmonella typhimur...
16764392   1 -------------------------------------------------------------------------------M 1   Salmonella typhimur...
15837112  16 DRSLLQLAPAWAASRAQSRVKAVAYrqayEAAEKTHLRQASRDFGSGNTIVTMTGAALRNQARHLDRNHDIISG-GLSTL 94  Xylella fastidiosa ...
15837315  16 HPTPDTATPQPNHPPRRWYQRLLPLggmfKAGQVDANDLWSSIPVSPDEYITQRLPILVARMREQWSNNDHVKR-YIDLC 94  Xylella fastidiosa ...
15839088  16 HPTPDTATPQPNHPPRRWYQRLLPLggmfKAGQVDANDLWSSIPVSPDEYITQRLPILVARMREQWSNNDHVKR-YIDLC 94  Xylella fastidiosa ...
15800502     --------------------------------------------------------------------------------     Escherichia coli O1...
15830886  78 QDHIVGSFFRLSHRPswrYLGIGEEEARAFSREVEAAWKEFAEDdcccIDVERKRTFTMMIREGVAMHAFNGELFVQATW 157 Escherichia coli O1...
17987529  50 MQRISDRIGQFSRAA----LFAASVVPLALASVPTVQAADYIAP----APAGVADAGLCNQQSVLRRVVSGFGYQVRHVP 121 Brucella melitensis
17545573  73 ATKITGLLDALKADL----LGGADAAFDTLKELQEAILKDQSGIaallAAVDRRVRFDAAQALTADEQTQARQNIGAVAA 148 Ralstonia solanacearum
17545576  75 EAFVANAVGTGIKPQ----SLSTDD---AFKADVQALWRDWTAE----ADAAGQTDFYGLQALACRAMLEGGECLIRLRP 143 Ralstonia solanacearum
16764273  80 EERIIGAKGIIVEPQ---PLTGTGTLNSVLAEKIRRCWAEWSVS----PEVTGQYTRPVLERLMLRTWLRDGEVFTQVLT 152 Salmonella typhimur...
16764392   2 EERVIGAKGIIVEPQ---PLTVAGTLNNALAEQIRARWAEWSVS----PDVTGQYTRPVLERLLLRTWLRDGEVFSQMVA 74  Salmonella typhimur...
15837112  95 VQNIIGPSGINIVPT---PRDVDGNLVESLVDAILPLYHAWSKR----PEVTWMHDWPSVQRLLARTWLRDGEAFVQELR 167 Xylella fastidiosa ...
15837315  95 RRNIVGPRGIVMQAQs--RKSRSGALDTTINDAIETWWQDWGRKg--hCDVTGKLSWREIQTLCVETCARDGECIARKIY 170 Xylella fastidiosa ...
15839088  95 RRNIVGPRGIVMQAQs--RKSRSGALDTTINDAIETWWQDWGRKg--hCDVTGKLSWREIQTLCVETCARDGECIARKIY 170 Xylella fastidiosa ...
15800502     --------------------------------------------------------------------------------     Escherichia coli O1...
15830886 158 DTRP--SRLFRTQFRMVSPKRISNPNN-TSDSRNCRAGVQINDSGAALGYYVSEDGYpgw--mpqKWTWIPRELPGGRAS 232 Escherichia coli O1...
17987529 122 NLPKv-GITAMSDVRLTRYEPKVSPAD-IERTYCQATAVLSDGQYRPVWYMVEEGQG-----------FAALGRNVEFCV 188 Brucella melitensis
17545573 149 SAIGdpETDFVPVFEAALTGA----------------------------------------------------------- 169 Ralstonia solanacearum
17545576 144 RRPEdgLTVPLQLQLLEAEHLPMTLNVdLPSGNAVRSGIEFDGLGRRVAYHLYRSHPddgrlapmSGQGGLDTVRVDASE 223 Ralstonia solanacearum
16764273 153 GKISglSPVAGVPFWLEALEPDYIPLErTDNNSNLVQGIYFNEWRRPVKYLVCQSWPg-------AGAAAVAVKEVTAEN 225 Salmonella typhimur...
16764392  75 GKMPglEPVAGVPFWLEAMEPDYVPMEqTDSTNNLIQGIYFNDWQRPKSYIVCKSWPg-------FATAMVATKLIDAEN 147 Salmonella typhimur...
15837112 168 GFLPtlQHGSGVPFSIEMLEPDLVPLDyDDPSQHILQGIQRNAWGRATGYYIYTQHPg------dPEVLLPEKKLVPSHL 241 Xylella fastidiosa ...
15837315 171 GTHAgpHGFCLQLIDPLRLPVRYQMLKtDQTGGFVRQGIEFNRFGKPLAYHFSSIDErdt---yyYSINGRGYVRVPAEE 247 Xylella fastidiosa ...
15839088 171 GTHAgpHGFCLQLIDPLRLPVRYQMLKtDQTGGFVRQGIEFNRFGKPLAYHFSSIDErdt---yyYSINGRGYVRVPAEE 247 Xylella fastidiosa ...
15800502     --------------------------------------------------------------------------------     Escherichia coli O1...
15830886 233 FIHVFEPVEDGQTRGANVFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIEseldtqsamdfilgansqEQRERLTGWIG 312 Escherichia coli O1...
17987529 189 DGFDRWYVYDGRCRVLR--------------------------------------------------------------- 205 Brucella melitensis
17545573     --------------------------------------------------------------------------------     Ralstonia solanacearum
17545576 224 IIHLYRVLRPGQIRGEPWLSRALVKLNELDQYDDAELVRKKTAAMFAGFVT------------------RQSPEDNLMGE 285 Ralstonia solanacearum
16764273 226 MLHLRFTRRLNQARGASLLAPVIIRLMDLKEYEDSERIAARIAASLGMFIK------------------KQDVGTDGYVA 287 Salmonella typhimur...
16764392 148 MLHLKFTRRLNQARGVTLLAPVIIRLLDLKEYEDSERLAARISAAFAMFIR------------------RSDAMVQDGDA 209 Salmonella typhimur...
15837112 242 IRHIRTIDRIGQVRGISLLASTFTRIEDLKDYEESERIAAKIAACMAAVII------------------KGEPSQYDPDK 303 Xylella fastidiosa ...
15837315 248 VIHIFKPVMVGQRRGLPWAATSLLRLHHLQGFEEAAVQNARAAASKMGFIK------------------YQEGFGARADE 309 Xylella fastidiosa ...
15839088 248 VIHIFKPVMVGQRRGLPWAATSLLRLHHLQGFEEAAVQNARAAASKMGFIK------------------YQEGFGARADE 309 Xylella fastidiosa ...
15800502     --------------------------------------------------------------------------------     Escherichia coli O1...
15830886 313 eiAAYYAAAPVRLGgAKVPHLMPGDSLNLQTAQDTDNGYSVFEQSLLRYIAAGLGVSYEQLSRNYAQMsYSTARASANES 392 Escherichia coli O1...
17987529     --------------------------------------------------------------------------------     Brucella melitensis
17545573     --------------------------------------------------------------------------------     Ralstonia solanacearum
17545576 286 glPDEAGISLVGLEpGTLQILEPGEDIKFSDPADVGGSYGEFLRTQFRAVAAALGITYEQLTGDLTGVnYSSIRAGLLEF 365 Ralstonia solanacearum
16764273 288 p---EKRKETQIQPgMLFDGLNPGEDIGMIKSDRPNAGLESFRMGQLRAVAAGLRGSFSSIARNYDGT-YSAQRQELVEA 363 Salmonella typhimur...
16764392 210 pdYADKDRDLDIEPgTILKDLLPGEDIGTIKSDRPNANLESFRMGQLRAVAAGVRGSFSSIARNYDGT-YSAQRQELVEA 288 Salmonella typhimur...
15837112 304 y-PSTGQRMMRFQPaMIFDGLNPGERIDPIDSTRPNPNLESYRDGQLRAIAAPMRISFSSLAKNYNGT-YSAQRQELVEQ 381 Xylella fastidiosa ...
15837315 310 heNVAQTIQMNAGP-LSFHELPAGGDIQDWNPQYPSGEFGLFTKAAKQSLAAGMDVSYHALSGDLADVnYSSIRQGTLDE 388 Xylella fastidiosa ...
15839088 310 heNVAQTIQMNAGP-LSFHELPAGGDIQDWNPQYPSGEFGLFTKAAKQSLAAGMDVSYHALSGDLADVnYSSIRQGTLDE 388 Xylella fastidiosa ...
15800502     --------------------------------------------------------------------------------     Escherichia coli O1...
15830886 393 WAYFMGRRK-FVASRQASQMFLCWLEEAIVRRVVTLPskarFSFQEARSAWgnCDWIGSGRMAIDGLKEVQEAVMLIEAG 471 Escherichia coli O1...
17987529     --------------------------------------------------------------------------------     Brucella melitensis
17545573     --------------------------------------------------------------------------------     Ralstonia solanacearum
17545576 366 RRRCEMVQHsVLVHQMCRPVWAAWMKQAVLSGALVAPgf-aRGGAARRRQYlqVKWIPQGWQWVDPEKEFKAMLLAIRAG 444 Ralstonia solanacearum
16764273 364 QEGYSILQD-SFIAAFTRPLYRRWLAAAVASGAIEVP----AGTDMSSLFN--AVYSGPVMPWIDPLKEANAWRVLIRGG 436 Salmonella typhimur...
16764392 289 QEGYAILQD-NFIAAVSRPVYRRWLATAITAGVIDVP----TDTDMATLFN--AVYSGPVMPWIDPLKEANAWRILIRGG 361 Salmonella typhimur...
15837112 382 YGAYGVLAH-EFISQMVRPLYERLIAIAVTSGALTLP----PNVPLANALG--ADYLPPSMPWIDPLKEINALTAQVQAG 454 Xylella fastidiosa ...
15837315 389 RERWKEDQQ-FFIESLHTPVFEAALKVALLSGQIRVHgkplPAEHYDRYRR--VSWQGRRWAWVDPRADVESALTCIRGG 465 Xylella fastidiosa ...
15839088 389 RERWKEDQQ-FFIESLHTPVFEAALKVALLSGQIRVHgkplPAEHYDRYRR--VSWQGRRWAWVDPRADVESALTCIRGG 465 Xylella fastidiosa ...
15800502   1 -------------------MYRAWLKQAVASGVIRLP----RDLDRSSLYT--AVYSGPVMPWIDPVKEAEAWKIQIRGG 55  Escherichia coli O1...
15830886 472 LSTYEKECAKRGDDYQEIFAQQVRETMERRAAGLKPPAWAAAAFESGLRQS----TEEEKSDS-RAA 533 Escherichia coli O157:H7
17987529     -------------------------------------------------------------------     Brucella melitensis
17545573     -------------------------------------------------------------------     Ralstonia solanacearum
17545576 445 LMSRSEAISTFGYDAEDIDREIAADNARADELGLVFDSDPRHTAKDGAPAVs---RADANAGEpVAA 508 Ralstonia solanacearum
16764273 437 AATEGDWVRARGGAPADVKRRRKAETDENRKLGLVFDTDPAHETGEQSDVKee-kKDPEKSTQgDGS 502 Salmonella typhimurium LT2
16764392 362 AATESDWVRARGGAPAEVKRRRKAEIDENRKLGLVFDTDPAHDPGEQDNAGsednSGGDKNAAgDDS 428 Salmonella typhimurium LT2
15837112 455 VRSLSSVIAERGGRMYDTVEQLSIDKQWAAERGLTLSVFPNATASPPPATT----DVDEGDVPqDQA 517 Xylella fastidiosa 9a5c
15837315 466 LTSTSQVILEQGRDPQDVFREIAQDLKEMQASGIPNDYLKYLLYGADLTVAnatpTEKEPTPHeHSH 532 Xylella fastidiosa 9a5c
15839088 466 LTSTSQVILEQGRDPQDVFREIAQDLKEMQASGIPNDYLKYLLYGADLTVAnatpTEKEPTPHeHSH 532 Xylella fastidiosa 9a5c
15800502  56 AATESDWVRAGGRNPDDVKRRRKAEIDENRKLDLVFDTDPASDKGGSSAAT----KRQEPQHTdDQS 118 Escherichia coli O157:H7 EDL933
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