5BNB


Conserved Protein Domain Family
UBCc_UBE2S

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cd23804: UBCc_UBE2S 
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin conjugating enzyme E2 S and related domains
The E2S subfamily includes mammalian ubiquitin-conjugating enzymes E2 S (UBE2S/E2EPF), plant ubiquitin-conjugating enzyme E2 22 (UBC22), and similar proteins. They are ubiquitin-conjugating enzymes (EC2.3.2.23) that accept ubiquitin from the E1 complex and catalyze the covalent attachment to other proteins. UBE2S catalyzes 'Lys-11'-linked polyubiquitination. It acts as an essential factor of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that controls progression through mitosis. UBE2S acts by specifically elongating 'Lys-11'-linked polyubiquitin chains initiated by the E2 enzyme UBE2C/UBCH10 on APC/C substrates, enhancing the degradation of APC/C substrates by the proteasome and promoting mitotic exit. It also acts by elongating ubiquitin chains initiated by the E2 enzyme UBE2D1/UBCH5 in vitro; it is however unclear whether UBE2D1/UBCH5 acts as an E2 enzyme for the APC/C in vivo. UBE2S is also involved in ubiquitination and subsequent degradation of VHL, resulting in an accumulation of HIF1A. In vitro, it can promote polyubiquitination using all 7 ubiquitin Lys residues, except 'Lys-48'-linked polyubiquitination.
Statistics
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PSSM-Id: 467424
Aligned: 69 rows
Threshold Bit Score: 217.729
Created: 11-Aug-2017
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
active site
Conserved site include 1 residue -Click on image for an interactive view with Cn3D
Feature 1: active site cysteine [active site], 1 residue position
Conserved feature residue pattern:CClick to see conserved feature residue pattern help
Evidence:
  • Comment:forms a thioester with ubiquitin or ubiquitin-like proteins
  • Comment:serves as the point of attachment of ubiquitin prior to transfer to cellular target
  • Citation:PMID 9497353
  • Citation:PMID 9705497

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
5BNB_A         10 PHIIRLVYKEVTTLTAdppdGIKVFPNEe------DLTDLQVTIEGPEgTPYAGGLFRMKLLLGkDFPAsPPKGYFLTKI 83   human
KIW06652      109 SKSLRRLASDHASLHTkglpPNYLFPPGkdedalaDLSSLTILLAGPEgTAFASGLYTLELKIPpTYPQaAPTAHFRTRI 188  Ochroconis ga...
CUG92601        5 ASAMRIIMKQVQDLHQqpieGIALRESD-------DLSVIEAEMCGPEdTPFFGGVFVVALHLTgEYPDvPPKGYFRTRI 77   Bodo saltans
OAF67676        3 QRLYSKLLRDITELHEnp-iQDIYITYD-------NLNKINAFIQGPEaTPFEGGTFSVQIEFNdSYPEePPAAFFLTKI 74   Intoshia linei
ORX80464        9 SEAIKQIVRDLYILHLnpieDIRVIINEn------NLFDFQLWIFGPTgTPYENGAFRVKLSFSsEFPHiPPSCKFLTKI 82   Basidiobolus ...
CAD2221434      5 AHGMRVVMRQMQEIDAnpiaDVHMAPTE-------DLRELHFEIDGPEgTPYEAGRFAGVLVFEeSYPDvPPKGYFRTRI 77   Angomonas deanei
CCG84145        2 ATSAKKLLSQLNSLNGkpleDLAILPSD-------NPFEINALLFGPAgTPYANGAFKVRLVYGpEYPAsPPKGHFLTKI 74   Taphrina defo...
XP_005538930    9 PGVITRLFREVQSLRDepvhGVELLNDSgq----dVLTELHAVITGPEdTPYEAGSFRVKLVLSgEYPYqPPRGYFLTKI 84   Cyanidioschyz...
XP_002839791    9 SSHRRRLAQDHSTLRTtppvDYFFPPNTts----dDLTSLQIFLAGPTqTPFESGLFQIHLRIPpTYPAePPKASFKTKI 84   Tuber melanos...
CCI10045       10 SQTIRSISNEIRQLASnstdCIRYVPSDn------QLNIIYVEIKGPDkTPYENAFFKVKLVLSeQFPDtPPKAFFDTKI 83   Albugo candida
Feature 1                     #                                                            
5BNB_A         84 FHPNVGA-NGEICVNVLKRDWTAELgIRHVLLTIKMLLIHPNPEsalNEEAGRLLLEnYEEYAARARLLTEIH 155  human
KIW06652      189 FHPNVDPsTGAVCVETLKRDWKPELtLRDVLLTISCLLVYPNPAsalNAEAGRLVETeFSEFERKAGLWARMH 261  Ochroconis gallopava
CUG92601       78 FHPNVAEvGGDICVNTLKKDWDPSLgLRHIFTVIRCLLIEPNPEsalNEEAGRLLLEeYTEYVRKAKMITHVH 150  Bodo saltans
OAF67676       75 FHPNIKEeTGEVCVNSLKKDWNPNLgLSHILKVIRCLLIEPNPTsalNPVASRLLLDaYSQYDERARMITRIH 147  Intoshia linei
ORX80464       83 YHPNISH-DGEVCINTLRYSWQPGLgIGHILMTLRCLLIQPYPEsimNDEAGRLFLEnYEAYAKYARLATEIH 154  Basidiobolus meristo...
CAD2221434     78 FHPNVSE-KGDICVNALKKDWKPDMgLRHVLQVIRCLLVEPNPEsalNEEAGRLLLEdYVTFEKKAAMLTRIH 149  Angomonas deanei
CCG84145       75 YHPNVSL-KGEICVNTLKRDWTADVtISHILMIIKCLLINPGPDsalNEDAGRLLIEsYDEFAKMAKMWTNVH 146  Taphrina deformans P...
XP_005538930   85 FHPNVSE-QGDICVNTLKRDWQSSYgIRHVLTVIRCLLIDPNPEsalNEEAGRLLLEdYAAFAARARIWTEVH 156  Cyanidioschyzon mero...
XP_002839791   85 FHPNVDErSGDVCVDTLKRDWKPTLtLRDVLITIRCLLVYPNPTsslNEAAGKLLLEdYEGYARHARLMTDVH 157  Tuber melanosporum
CCI10045       84 YHPNIATnNGEVCVNTLKKDWSPKVgILHIAQVIRCLLIVPSPDsalNDEAGRLFMEsYEEYAERARIMTKIH 156  Albugo candida

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