1P6P,1TW4,2LFO,2FT9


Conserved Protein Domain Family
L-BABP-like

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cd19447: L-BABP-like 
liver bile acid-binding protein and similar proteins
Liver bile acid-binding protein (also known as "fatty acid-binding protein, liver", LB-FABP, L-BABP, L-FABP, FABP1) is present in the liver of the vertebrates fish, amphibians, reptiles, and birds but not in mammals. L-BABPs bind free fatty acids and their coenzyme A derivatives, bilirubin, and some other small molecules in the cytoplasm. The role of L-BABPs may be that of cellular and metabolic trafficking of bile acids; they may be involved in intracellular lipid transport. This subgroup belongs to the intracellular fatty acid-binding protein (FABP) family, members of which are small proteins that bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.
Statistics
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PSSM-Id: 381222
Aligned: 6 rows
Threshold Bit Score: 211.614
Created: 22-Jun-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 44 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding cavity [chemical binding site]
Evidence:
  • Comment:ligand is bound within the beta-barrel in a central internal water-filled cavity lined with polar and hydrophobic amino acids
  • Comment:based on L-BABP and on other cytosolic fatty acid-binding protein family members with structure
  • Structure:1TW4; chicken liver bile acid-binding protein with bound cholic acid, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #           #  ##  # #   ## ##  # # # #      # # # #### # # #       # ### # # #
1P6P_A         1 AFNGTWNVYAQENYENFLRTVGLpEDIIKVAKDVNPVIEIEQNGNEFVVTSKTPKQTHSNSFTVGKESEITSMDGKKIKV 80  Bufo arenarum
1TW4_A         1 AFSGTWQVYAQENYEEFLKALALpEDLIKMARDIKPIVEIQQKGDDFVVTSKTPRQTVTNSFTLGKEADITTMDGKKLKC 80  chicken
2LFO_A         1 AFSGTWQVYAQENYEEFLKALALpEDLIKMARDIKPIVEIQQKGDDFVVTSKTPRQTVTNSFTLGKEADITTMDGKKLKC 80  chicken
2FT9_A         1 PFNGTWQVYSQENYEAFLRAVGLpEDIINVAKDINPIIEIQQNGDNFVVTSKTPNQSVTNSFTIGKEAEITSMGGKKIKC 80  axolotl
XP_017207372   4 DFNGSWKLYEQENAEEFLRALSApEHYIRMLQEVRPVTVIRQQGEEFSISVQTALRSNTNTFRIGTESEFTTLDGQKINA 83  Danio rerio
NP_694492      2 AFSGTWQVYAQENYEEFLRAISLpEEVIKLAKDVKPVTEIQQNGSDFTITSKTPGKTVTNSFTIGKEAEITTMDGKKLKC 81  Danio rerio
Feature 1         #      # #    # # #      # # ##     # # #  
1P6P_A        81 TVQLEGGKLICKSDKFSHIQEVNGDEMVEKITIGsSTLTRKSKR 124 Bufo arenarum
1TW4_A        81 TVHLANGKLVTKSEKFSHEQEVKGNEMVETITFGgVTLIRRSKR 124 chicken
2LFO_A        81 TVHLANGKLVCKSEKFSHEQEVKGNEMVETITFGgVTLIRRSKR 124 chicken
2FT9_A        81 TVVLEGGKLVSKTDQFSHIQEVKGNEMVETLTVGgATLIRRSKR 124 axolotl
XP_017207372  84 TARLIDGKIVIESEKFTHVRELRDGEMLETLTAGhVTFIRRSRR 127 Danio rerio
NP_694492     82 IVKLDGGKLVCRTDRFSHIQEIKAGEMVETLTVGgTTMIRKSKK 125 Danio rerio

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