2YU4,3HTK


Conserved Protein Domain Family
SPL-RING_NSE2

?
cd16651: SPL-RING_NSE2 
Click on image for an interactive view with Cn3D
SPL-RING finger found in E3 SUMO-protein ligase NSE2 and similar proteins
NSE2, also known as MMS21 homolog (MMS21) or non-structural maintenance of chromosomes element 2 homolog (Non-SMC element 2 homolog, NSMCE2), is an autosumoylating small ubiquitin-like modifier (SUMO) ligase required for the response to DNA damage. It regulates sumoylation and nuclear-to-cytoplasmic translocation of skeletal and heart muscle-specific variant of the alpha subunit of nascent polypeptide associated complex (skNAC)-Smyd1 in myogenesis. It is also required for resisting extrinsically induced genotoxic stress. Moreover, NSE2 together with its partner proteins SMC6 and SMC5 form a tight subcomplex of the structural maintenance of chromosomes SMC5-6 complex, which includes another two subcomplexes, NSE1-NSE3-NSE4 and NSE5-NSE6. SMC6 and NSE3 are sumoylated in an NSE2-dependent manner, but SMC5 and NSE1 are not. NSE2-dependent E3 SUMO ligase activity is required for efficient DNA repair, but not for SMC5-6 complex stability. NSE2 contains a RING variant known as a Siz/PIAS (protein inhibitor of activated signal transducer and activator of transcription)-like RING (SPL-RING) finger that is likely shared by the SP-RING type SUMO E3 ligases, such as PIAS family proteins. The SPL-RING finger is a variant of the RING finger, which lacks the second, fifth, and sixth zinc-binding residues of the consensus C3H2C3-/C3HC4-type RING fingers. It harbors only one Zn binding site and is required for the sumoylating activity.
Statistics
?
PSSM-Id: 438313
Aligned: 55 rows
Threshold Bit Score: 59.5826
Created: 22-Dec-2011
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:C H C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:2YU4; Homo sapiens NSE2 (Mms21) binds one Zinc2+ ion through its SPL-RING finger.
  • Comment:The SP-like RING (SPL-RING) domain of Mms21 proteins is likely shared by the SP-RING type SUMO E3 ligases, such as PIAS family proteins. These domains share sequence similarity with the RING domains of ubiquitin E3 ligases, but harbor only one Zn binding site.
  • Comment:The SPL-RING finger is a variant of RING finger, which lacks the second, fifth, and sixth zinc-binding residues of the consensus C3H2C3-/C3HC4-type RING fingers.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                      #  #                                    #    #    
2YU4_A         8 FTCPIT---KEEMKKPv---------KNKVCG-HTYEEDAIVRMIEsrqk--------------rkkkAYCPqiGCShtd 60  human
Q5CJM4       112 KVCCLT---RDVFKDPvshrydtsekVENMCKnHIYEKDALLKYLGss------------------kkKICPiaGCNflv 170 Cryptosporidium...
XP_002676649 167 TTCPWT---GSNLQEPi---------QSKKCK-HVYEKTVAFQKLRtgg-----------------gfFECPiiGCResr 216 Naegleria grube...
Q8GYH7       157 MTCPLSgkpVTELADPv---------RSMDCR-HVYEKSVILHYIVnn------------------pnANCPvaGCRgkl 208 thale cress
KTW26946     181 IKCPLT---MTYLEKPl---------KSNICG-HYFSEHAILEILKsnn-----------------gkYACPivGCSkii 230 Pneumocystis ca...
ORX69045      92 YKCPIS---MAWLNNPv---------TSRTCK-HSYSKDSIMSMLRarh-----------------gsCPCPvaGCShtv 141
XP_016583613 356 FKCPLS---LVVMQDPy---------RSNVCK-HSFEHSAIMEYLRptgssr----------saahvpKKCPqtGCTkef 412
XP_024362396 352 VVCPVSgvpVVGLKDPv---------RSEGCE-HVYDRASALNYISsmek---------------dgfCPCAvaGCRall 406 Physcomitrium p...
OEU22119     170 IKCHLT---LAVMEDPv---------RSRTCK-HSFSKAAIVHHLRv--------------------sKICPvaGCInrn 216 Fragilariopsis ...
ETO17077     145 SVCALT---QSRFQTPv---------RNKKCK-HIFEKHALEAYINekeqqrnvyivegfdppeylngAQCPmcGCTnpa 211
Feature 1                                
2YU4_A        61 i------rksDLIQDEALRRAIEN 78  human
Q5CJM4       171 -------vkkFLKRDQEVLDQIQC 187 Cryptosporidium hominis
XP_002676649 217 i------teaDLVESPSLTFKIRK 234 Naegleria gruberi strain NEG-M
Q8GYH7       209 -------qnsKVICDAMLKFEIEE 225 thale cress
KTW26946     231 -------dnsVLVYDKIMERRVNI 247 Pneumocystis carinii B80
ORX69045     142 -------nvrDLQPDRLLERKVAR 158
XP_016583613 413 -------talDLVPDTTMRRRIQQ 429
XP_024362396 407 -------aekKLVADSRLWQDIEE 423 Physcomitrium patens
OEU22119     217 m------rtsELEDDPDTAILVRR 234 Fragilariopsis cylindrus CCMP1102
ETO17077     212 tgkptiltlnDIVEDPELVLCVQQ 235

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap